Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48505 * 109.46964 * 270.00287 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00243 * 3 2 1 6 6 H 1.48495 * 109.46904 * 150.00531 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99949 * 12 11 10 14 14 C 1.47444 * 111.00020 * 170.00041 * 13 12 11 15 15 C 1.54320 * 107.23350 * 123.25892 * 14 13 12 16 16 C 1.55145 * 103.01491 * 22.28497 * 15 14 13 17 17 H 1.08996 * 110.99124 * 82.43933 * 16 15 14 18 18 F 1.39909 * 110.98741 * 206.25435 * 16 15 14 19 19 C 1.47844 * 111.00277 * 290.84556 * 13 12 11 20 20 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 22 22 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 23 23 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 24 24 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 25 25 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 26 26 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 27 27 H 1.08999 * 109.88907 * 242.66679 * 14 13 12 28 28 H 1.09002 * 109.88707 * 3.69423 * 14 13 12 29 29 H 1.09002 * 110.70642 * 140.66639 * 15 14 13 30 30 H 1.08999 * 110.70887 * 263.90385 * 15 14 13 31 31 H 1.09001 * 110.36893 * 332.46515 * 19 13 12 32 32 H 1.08997 * 110.37641 * 94.80100 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4079 -5.8872 1.2559 14 6 4.2979 -7.0539 1.3995 15 6 5.7332 -6.5151 1.5758 16 6 5.5030 -5.0698 2.0908 17 1 5.3225 -5.0625 3.1657 18 9 6.5815 -4.2422 1.7601 19 6 4.2290 -4.6590 1.3114 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 0.9451 -4.9822 0.8903 24 1 0.9446 -4.9827 -0.8897 25 1 2.1819 -6.9376 -0.0885 26 1 3.3216 -5.7961 -0.8412 27 1 4.0096 -7.6346 2.2757 28 1 4.2401 -7.6765 0.5067 29 1 6.2784 -7.1046 2.3129 30 1 6.2610 -6.5049 0.6221 31 1 4.4891 -4.3308 0.3051 32 1 3.6967 -3.8703 1.8430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689826053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -99.417809 kcal Electronic energy + Delta-G solvation = -14963.391504 eV Core-core repulsion = 12259.132480 eV Total energy + Delta-G solvation = -2704.259024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.42335 -38.69890 -36.43536 -32.87368 -31.86541 -28.60364 -28.10487 -26.54003 -22.51252 -22.03759 -21.18351 -20.56480 -16.77824 -16.33088 -16.29565 -15.66821 -14.76733 -14.54932 -14.40032 -14.12549 -13.77439 -13.27491 -13.24140 -12.83901 -12.24803 -11.80829 -11.51037 -11.36465 -11.20842 -10.82885 -10.73051 -10.56773 -10.50399 -10.33760 -9.94511 -9.08131 -8.80256 -8.19454 -8.13842 -6.09729 -4.11371 3.31471 3.36588 3.42384 3.99951 4.35962 4.42587 4.56409 4.76301 4.86851 5.00308 5.26946 5.28918 5.45850 5.58180 5.63132 5.66106 5.72213 5.96894 6.04554 6.11163 6.24299 6.36759 6.54965 7.10679 7.12762 7.20178 7.45367 7.80531 8.16758 8.58966 9.02149 9.53702 11.01786 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.007468 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.406386 B = 3748.192229 C = 4477.217078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.064 3.936 12 C 0.056 3.944 13 N -0.524 5.524 14 C 0.041 3.959 15 C -0.166 4.166 16 C 0.073 3.927 17 H 0.097 0.903 18 F -0.208 7.208 19 C 0.037 3.963 20 H 0.264 0.736 21 H 0.003 0.997 22 H 0.005 0.995 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 -13.253 2.593 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.314 6.314 11 C -0.014 4.014 12 C -0.072 4.072 13 N -0.248 5.248 14 C -0.086 4.086 15 C -0.205 4.205 16 C 0.036 3.964 17 H 0.115 0.885 18 F -0.189 7.189 19 C -0.091 4.091 20 H 0.073 0.927 21 H 0.021 0.979 22 H 0.023 0.977 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.273 -13.077 2.978 15.257 hybrid contribution 0.599 0.872 -0.752 1.298 sum 7.873 -12.205 2.227 14.694 Atomic orbital electron populations 1.69965 1.06102 1.27117 1.50612 1.24941 0.94953 0.99407 0.95167 0.86365 0.79742 0.82360 0.78224 1.20508 1.21078 1.19566 1.21054 0.94001 0.89397 1.50740 0.91606 1.20168 0.88761 0.83568 0.95313 1.87857 1.35405 1.12994 1.95184 1.22255 0.94266 0.85408 0.99478 1.22390 0.96279 0.98431 0.90119 1.63590 1.24553 1.01524 1.35175 1.22795 0.90047 0.93998 1.01804 1.23342 0.98413 0.96206 1.02548 1.22842 0.84542 0.88249 1.00802 0.88489 1.92799 1.57457 1.74195 1.94413 1.23568 0.91072 0.93269 1.01185 0.92684 0.97924 0.97682 0.93521 0.94133 0.90154 0.94051 0.90255 0.92399 0.90043 0.90423 0.91327 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.20 5.37 5.69 36.00 0.20 5.57 16 10 O -0.39 -9.28 7.67 -35.23 -0.27 -9.55 16 11 C 0.06 1.18 6.23 37.16 0.23 1.42 16 12 C 0.06 0.84 5.13 -3.82 -0.02 0.82 16 13 N -0.52 -7.85 5.16 -231.25 -1.19 -9.04 16 14 C 0.04 0.47 6.87 -2.83 -0.02 0.45 16 15 C -0.17 -1.85 6.75 -24.90 -0.17 -2.02 16 16 C 0.07 1.01 4.85 -24.59 -0.12 0.89 16 17 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 18 F -0.21 -3.36 17.24 2.25 0.04 -3.32 16 19 C 0.04 0.62 4.88 -2.30 -0.01 0.61 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 26 H 0.04 0.63 7.85 -51.93 -0.41 0.23 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.59 7.55 -51.93 -0.39 0.20 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.29 7.21 -51.93 -0.37 0.91 16 32 H 0.10 2.03 7.60 -51.93 -0.39 1.64 16 LS Contribution 269.01 15.07 4.05 4.05 Total: -1.00 -30.99 269.01 -6.89 -37.88 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.91 Total: -4.56 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.32 Total: -6.17 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.46 Total: -35.36 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.27 Total: -9.55 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.99 -6.89 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689826053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.533 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds