Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99785 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47091 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47219 * 64.99734 * 12 11 10 14 14 C 1.47442 * 110.99778 * 169.99815 * 13 12 11 15 15 C 1.54326 * 107.23024 * 123.26074 * 14 13 12 16 16 C 1.55134 * 103.01778 * 22.28153 * 15 14 13 17 17 H 1.09004 * 110.99059 * 206.25205 * 16 15 14 18 18 F 1.39906 * 110.99187 * 82.44009 * 16 15 14 19 19 C 1.47836 * 111.00184 * 290.84440 * 13 12 11 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09003 * 109.47235 * 299.99837 * 11 10 9 24 24 H 1.09002 * 109.47326 * 59.99644 * 11 10 9 25 25 H 1.09002 * 109.47444 * 184.99757 * 12 11 10 26 26 H 1.09004 * 109.47298 * 304.99785 * 12 11 10 27 27 H 1.08998 * 109.89035 * 242.65955 * 14 13 12 28 28 H 1.08994 * 109.89449 * 3.85383 * 14 13 12 29 29 H 1.08998 * 110.70599 * 140.66193 * 15 14 13 30 30 H 1.08998 * 110.70235 * 263.90021 * 15 14 13 31 31 H 1.09003 * 110.37502 * 332.46688 * 19 13 12 32 32 H 1.08998 * 110.37809 * 94.80344 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5653 -4.8754 0.0011 12 6 2.6483 -5.9561 0.0004 13 7 3.4093 -5.8875 1.2551 14 6 4.2995 -7.0542 1.3975 15 6 5.7349 -6.5153 1.5728 16 6 5.5052 -5.0703 2.0884 17 1 6.3452 -4.4254 1.8303 18 9 5.2746 -5.0614 3.4683 19 6 4.2304 -4.6594 1.3103 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 0.9455 -4.9822 0.8914 24 1 0.9448 -4.9827 -0.8886 25 1 2.1823 -6.9375 -0.0887 26 1 3.3212 -5.7956 -0.8420 27 1 4.0121 -7.6352 2.2737 28 1 4.2431 -7.6751 0.5034 29 1 6.2808 -7.1051 2.3092 30 1 6.2618 -6.5048 0.6186 31 1 4.4896 -4.3306 0.3039 32 1 3.6985 -3.8708 1.8426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689826058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = -102.242636 kcal Electronic energy + Delta-G solvation = -15026.556189 eV Core-core repulsion = 12322.174672 eV Total energy + Delta-G solvation = -2704.381518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.38560 -38.63163 -36.56147 -33.14053 -31.90849 -28.71189 -28.08096 -26.18061 -22.61635 -22.24266 -21.10396 -20.55333 -16.99931 -16.63704 -16.30913 -15.77355 -14.81924 -14.76737 -14.30901 -13.89662 -13.72640 -13.44790 -13.05481 -12.65657 -12.40455 -11.87749 -11.57292 -11.34556 -11.17506 -10.98424 -10.73047 -10.70434 -10.59971 -10.12596 -10.05060 -8.84460 -8.63550 -8.24290 -8.15706 -6.46489 -4.15326 3.42259 3.45061 3.63714 4.05548 4.35193 4.42582 4.55107 4.71182 4.83238 4.88419 5.31588 5.36088 5.41960 5.46115 5.55589 5.60076 5.65681 5.93140 5.94741 6.03849 6.21519 6.28318 6.50144 6.78353 7.11622 7.14434 7.20323 7.88212 8.17724 8.62280 8.80429 9.55425 10.93743 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.007226 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.346968 B = 3874.091248 C = 4439.985053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.078 2.922 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.596 4.596 8 H 0.059 0.941 9 C 0.187 3.813 10 O -0.386 6.386 11 C 0.062 3.938 12 C 0.056 3.944 13 N -0.525 5.525 14 C 0.041 3.959 15 C -0.166 4.166 16 C 0.073 3.927 17 H 0.095 0.905 18 F -0.204 7.204 19 C 0.036 3.964 20 H 0.267 0.733 21 H -0.004 1.004 22 H -0.007 1.007 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 -12.781 0.996 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.905 3.095 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.634 4.634 8 H 0.077 0.923 9 C 0.113 3.887 10 O -0.306 6.306 11 C -0.016 4.016 12 C -0.072 4.072 13 N -0.250 5.250 14 C -0.087 4.087 15 C -0.205 4.205 16 C 0.036 3.964 17 H 0.112 0.888 18 F -0.185 7.185 19 C -0.091 4.091 20 H 0.077 0.923 21 H 0.013 0.987 22 H 0.011 0.989 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.002 -11.102 1.421 14.364 hybrid contribution 0.340 -1.851 -0.661 1.995 sum 9.342 -12.953 0.760 15.988 Atomic orbital electron populations 1.70796 1.06854 1.30459 1.46545 1.25917 0.96422 1.02679 0.93623 0.83424 0.74766 0.74630 0.76711 1.20610 1.21281 1.21169 1.21876 0.95292 0.90456 1.55772 0.92257 1.20254 0.89426 0.85001 0.94066 1.87867 1.34794 1.12802 1.95092 1.22307 0.94530 0.85384 0.99415 1.22360 0.96233 0.98259 0.90307 1.63598 1.24991 1.01612 1.34797 1.22848 0.90423 0.93919 1.01539 1.23385 0.98441 0.96312 1.02370 1.22741 0.99475 0.97448 0.76696 0.88761 1.92809 1.96104 1.97531 1.32035 1.23651 0.91377 0.93466 1.00651 0.92279 0.98665 0.98944 0.93509 0.94176 0.90171 0.94104 0.90416 0.92589 0.89833 0.89895 0.91003 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.65 55.43 0.76 -27.36 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.08 25.52 29.90 -169.99 -5.08 20.44 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.60 -17.65 9.43 -34.44 -0.32 -17.98 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.19 5.11 5.00 36.00 0.18 5.29 16 10 O -0.39 -9.13 7.67 -35.23 -0.27 -9.40 16 11 C 0.06 1.15 6.23 37.16 0.23 1.39 16 12 C 0.06 0.86 5.13 -3.82 -0.02 0.84 16 13 N -0.53 -8.28 5.16 -231.26 -1.19 -9.48 16 14 C 0.04 0.50 6.87 -2.83 -0.02 0.48 16 15 C -0.17 -1.82 6.75 -24.91 -0.17 -1.99 16 16 C 0.07 1.01 4.85 -24.60 -0.12 0.89 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 18 F -0.20 -3.32 17.24 2.25 0.04 -3.28 16 19 C 0.04 0.61 4.88 -2.30 -0.01 0.59 16 20 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 21 H 0.00 -0.12 8.01 -51.93 -0.42 -0.54 16 22 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 1.00 8.03 -51.93 -0.42 0.59 16 26 H 0.04 0.61 7.85 -51.93 -0.41 0.21 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.59 7.55 -51.93 -0.39 0.19 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.24 7.21 -51.93 -0.37 0.87 16 32 H 0.10 2.12 7.60 -51.93 -0.39 1.72 16 LS Contribution 267.70 15.07 4.03 4.03 Total: -1.00 -32.13 267.70 -6.92 -39.05 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.85 Total: -3.91 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.35 Total: -10.10 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.44 Total: -36.84 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.27 Total: -9.40 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.13 -6.92 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689826058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.188 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds