Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99785 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47091 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47219 * 64.99734 * 12 11 10 14 14 C 1.47442 * 110.99778 * 169.99815 * 13 12 11 15 15 C 1.54326 * 107.23024 * 123.26074 * 14 13 12 16 16 C 1.55134 * 103.01778 * 22.28153 * 15 14 13 17 17 H 1.09004 * 110.99059 * 206.25205 * 16 15 14 18 18 F 1.39906 * 110.99187 * 82.44009 * 16 15 14 19 19 C 1.47836 * 111.00184 * 290.84440 * 13 12 11 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09003 * 109.47235 * 299.99837 * 11 10 9 24 24 H 1.09002 * 109.47326 * 59.99644 * 11 10 9 25 25 H 1.09002 * 109.47444 * 184.99757 * 12 11 10 26 26 H 1.09004 * 109.47298 * 304.99785 * 12 11 10 27 27 H 1.08998 * 109.89035 * 242.65955 * 14 13 12 28 28 H 1.08994 * 109.89449 * 3.85383 * 14 13 12 29 29 H 1.08998 * 110.70599 * 140.66193 * 15 14 13 30 30 H 1.08998 * 110.70235 * 263.90021 * 15 14 13 31 31 H 1.09003 * 110.37502 * 332.46688 * 19 13 12 32 32 H 1.08998 * 110.37809 * 94.80344 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5653 -4.8754 0.0011 12 6 2.6483 -5.9561 0.0004 13 7 3.4093 -5.8875 1.2551 14 6 4.2995 -7.0542 1.3975 15 6 5.7349 -6.5153 1.5728 16 6 5.5052 -5.0703 2.0884 17 1 6.3452 -4.4254 1.8303 18 9 5.2746 -5.0614 3.4683 19 6 4.2304 -4.6594 1.3103 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 0.9455 -4.9822 0.8914 24 1 0.9448 -4.9827 -0.8886 25 1 2.1823 -6.9375 -0.0887 26 1 3.3212 -5.7956 -0.8420 27 1 4.0121 -7.6352 2.2737 28 1 4.2431 -7.6751 0.5034 29 1 6.2808 -7.1051 2.3092 30 1 6.2618 -6.5048 0.6186 31 1 4.4896 -4.3306 0.3039 32 1 3.6985 -3.8708 1.8426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689826058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = -124.847785 kcal Electronic energy + Delta-G solvation = -15027.536422 eV Core-core repulsion = 12322.174672 eV Total energy + Delta-G solvation = -2705.361751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.58291 -39.90434 -38.30482 -35.29239 -33.24213 -29.84445 -29.64386 -28.12495 -24.78373 -23.65467 -22.12962 -21.78876 -19.19004 -17.85414 -17.59767 -17.47826 -16.37798 -15.93253 -15.76951 -15.54322 -15.32855 -14.98198 -14.40788 -14.28826 -13.77677 -13.61927 -13.11826 -12.88080 -12.50949 -12.48369 -12.36012 -11.93840 -11.89068 -11.74606 -11.53966 -10.86286 -10.84577 -10.34565 -9.34322 -8.84393 -6.55401 1.51382 1.60484 1.81218 2.48486 2.89984 3.02703 3.04302 3.34495 3.49098 3.71589 3.92639 4.15237 4.25262 4.34850 4.38005 4.44459 4.50767 4.60438 4.68755 4.80265 4.83592 4.88560 4.92517 5.11164 5.22670 5.66110 5.90325 5.91699 6.07714 6.31741 6.63696 7.25871 8.56566 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.007226 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.346968 B = 3874.091248 C = 4439.985053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.030 4.030 3 Si 1.127 2.873 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.620 4.620 8 H 0.056 0.944 9 C 0.198 3.802 10 O -0.393 6.393 11 C 0.051 3.949 12 C 0.066 3.934 13 N -0.548 5.548 14 C 0.037 3.963 15 C -0.153 4.153 16 C 0.069 3.931 17 H 0.116 0.884 18 F -0.221 7.221 19 C 0.038 3.962 20 H 0.255 0.745 21 H -0.025 1.025 22 H -0.019 1.019 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.116 0.884 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -13.762 0.518 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.228 4.228 3 Si 0.945 3.055 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.657 4.657 8 H 0.074 0.926 9 C 0.123 3.877 10 O -0.312 6.312 11 C -0.026 4.026 12 C -0.062 4.062 13 N -0.273 5.273 14 C -0.089 4.089 15 C -0.191 4.191 16 C 0.032 3.968 17 H 0.134 0.866 18 F -0.202 7.202 19 C -0.090 4.090 20 H 0.064 0.936 21 H -0.008 1.008 22 H -0.001 1.001 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.134 0.866 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.818 -12.137 0.944 16.286 hybrid contribution -0.274 -1.653 -0.499 1.749 sum 10.543 -13.791 0.445 17.365 Atomic orbital electron populations 1.70925 1.07830 1.29772 1.48053 1.27613 0.96455 1.06663 0.92031 0.82843 0.74095 0.70211 0.78314 1.20181 1.18937 1.19299 1.22243 0.95406 0.91908 1.56192 0.92592 1.19903 0.89328 0.86084 0.92416 1.87852 1.34393 1.13948 1.95057 1.22662 0.96304 0.84159 0.99503 1.22355 0.95307 0.98136 0.90431 1.63481 1.26209 1.02413 1.35182 1.22954 0.90454 0.92665 1.02868 1.23376 0.98033 0.93845 1.03856 1.22952 0.98347 1.00189 0.75328 0.86644 1.92772 1.96189 1.97757 1.33485 1.23423 0.92596 0.93094 0.99917 0.93626 1.00761 1.00135 0.94491 0.92976 0.86625 0.93480 0.90213 0.90048 0.87984 0.87602 0.91923 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.65 21.45 0.29 -58.07 16 2 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 3 Si 1.13 50.73 29.90 68.60 2.05 52.79 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.62 -37.54 9.43 25.60 0.24 -37.29 16 8 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 9 C 0.20 11.23 5.00 71.24 0.36 11.59 16 10 O -0.39 -19.10 7.67 -148.98 -1.14 -20.25 16 11 C 0.05 1.92 6.23 71.98 0.45 2.37 16 12 C 0.07 1.87 5.13 86.30 0.44 2.32 16 13 N -0.55 -16.60 5.16 -885.56 -4.57 -21.17 16 14 C 0.04 0.80 6.87 86.65 0.59 1.39 16 15 C -0.15 -2.83 6.75 31.78 0.21 -2.61 16 16 C 0.07 1.79 4.85 31.98 0.16 1.94 16 17 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 18 F -0.22 -7.07 17.24 44.97 0.78 -6.29 16 19 C 0.04 1.28 4.88 86.77 0.42 1.70 16 20 H 0.25 16.19 7.22 -92.71 -0.67 15.53 16 21 H -0.03 -1.51 8.01 -2.39 -0.02 -1.52 16 22 H -0.02 -1.10 8.01 -2.39 -0.02 -1.12 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.12 2.50 8.03 -2.39 -0.02 2.48 16 26 H 0.05 1.30 7.85 -2.38 -0.02 1.29 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.35 7.55 -2.39 -0.02 1.33 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.18 7.21 -2.39 -0.02 2.16 16 32 H 0.05 2.36 7.60 -2.39 -0.02 2.34 16 Total: -1.00 -70.92 267.70 1.93 -69.00 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.18 Total: 3.92 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.34 Total: -19.92 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -4.28 Total: -79.24 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.14 Total: -20.25 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.78 Total: -6.29 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.79 kcal Total: -70.92 1.93 -69.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689826058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.851 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds