Wall clock time and date at job start Mon Mar 30 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 N 1.46506 * 109.47289 * 124.99944 * 3 2 1 5 5 C 1.39668 * 120.00181 * 180.02562 * 4 3 2 6 6 C 1.38907 * 120.07584 * 359.71907 * 5 4 3 7 7 C 1.38108 * 119.92754 * 179.77093 * 6 5 4 8 8 C 1.38283 * 120.07138 * 0.50866 * 7 6 5 9 9 C 1.50700 * 119.92567 * 179.72344 * 8 7 6 10 10 C 1.50699 * 109.47004 * 270.02519 * 9 8 7 11 11 H 1.08005 * 120.00240 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00044 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00220 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 120.00191 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47075 * 59.99835 * 14 12 10 16 16 H 1.48497 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46908 * 299.99580 * 14 12 10 18 18 C 1.38292 * 120.15211 * 359.74911 * 8 7 6 19 19 C 1.38103 * 120.06781 * 359.97438 * 18 8 7 20 20 H 1.07994 * 119.99868 * 179.97438 * 1 2 3 21 21 H 1.08001 * 119.99780 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47438 * 4.99726 * 3 2 1 24 24 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 25 25 H 0.97001 * 119.99251 * 0.02562 * 4 3 2 26 26 H 1.08004 * 120.03686 * 0.02562 * 6 5 4 27 27 H 1.07998 * 119.96672 * 180.25929 * 7 6 5 28 28 H 1.08997 * 109.47151 * 30.02383 * 9 8 7 29 29 H 1.08997 * 109.47346 * 150.02750 * 9 8 7 30 30 H 0.96998 * 120.00488 * 179.97438 * 13 12 10 31 31 H 1.07994 * 119.96476 * 180.02562 * 18 8 7 32 32 H 1.08003 * 120.03201 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 3.8067 2.4483 1.3408 6 6 3.7387 3.5314 0.4739 7 6 4.5405 4.6356 0.6865 8 6 5.4180 4.6593 1.7550 9 6 6.2959 5.8633 1.9804 10 6 7.5961 5.6824 1.2402 11 1 7.7696 4.7852 0.6645 12 6 8.5647 6.6619 1.2987 13 7 8.3537 7.7543 2.0001 14 14 10.1767 6.4375 0.3818 15 1 9.9037 6.2892 -1.0703 16 1 11.0417 7.6239 0.6038 17 1 10.8659 5.2212 0.8827 18 6 5.4922 3.5804 2.6170 19 6 4.6890 2.4755 2.4133 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3585 2.1317 0.0895 24 1 2.6213 1.4027 -0.9314 25 1 3.0450 0.5745 1.7352 26 1 3.0565 3.5119 -0.3632 27 1 4.4851 5.4799 0.0153 28 1 5.7897 6.7559 1.6129 29 1 6.4967 5.9722 3.0461 30 1 9.0353 8.4432 2.0416 31 1 6.1782 3.6023 3.4507 32 1 4.7477 1.6331 3.0867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902228285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:35 Heat of formation + Delta-G solvation = 34.921923 kcal Electronic energy + Delta-G solvation = -13388.927185 eV Core-core repulsion = 11121.262793 eV Total energy + Delta-G solvation = -2267.664391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.88708 -36.32477 -33.74438 -32.56370 -30.23898 -29.96232 -26.84253 -25.07253 -22.72938 -21.93486 -20.07934 -19.94629 -16.80762 -16.21933 -16.06123 -15.10471 -14.73313 -14.14686 -13.85858 -13.41735 -13.20983 -12.69983 -12.62494 -12.39953 -11.74793 -11.32829 -11.21682 -11.16224 -10.61635 -10.51682 -10.08960 -9.91110 -9.67114 -9.36628 -8.96972 -8.34405 -8.19316 -6.72861 -5.94551 -3.99135 1.88236 2.16573 2.40917 3.36727 3.40377 3.44055 3.84289 4.46846 4.61947 4.71248 4.87117 5.37823 5.40005 5.50272 5.57864 5.61068 5.63421 6.08506 6.17189 6.27225 6.36758 6.40101 6.50438 6.75964 6.90161 7.34349 7.34756 7.47592 7.64980 7.89023 8.00780 8.01902 8.10089 8.44425 9.06554 9.64146 11.13767 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.059357 B = 0.005068 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.609148 B = 5523.821202 C = 5615.662411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.168 4.168 3 C 0.156 3.844 4 N -0.756 5.756 5 C 0.180 3.820 6 C -0.196 4.196 7 C -0.081 4.081 8 C -0.085 4.085 9 C 0.053 3.947 10 C -0.509 4.509 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.080 4.080 19 C -0.193 4.193 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.394 0.606 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.116 0.884 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 -12.832 -2.482 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.389 5.389 5 C 0.081 3.919 6 C -0.218 4.218 7 C -0.099 4.099 8 C -0.086 4.086 9 C 0.016 3.984 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.099 4.099 19 C -0.215 4.215 20 H 0.118 0.882 21 H 0.118 0.882 22 H 0.130 0.870 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.576 -12.601 -2.604 17.992 hybrid contribution 0.959 -0.439 -0.338 1.107 sum -11.617 -13.040 -2.941 17.710 Atomic orbital electron populations 1.23925 0.95809 1.02168 0.99395 1.23053 0.96160 0.98496 1.00934 1.20276 0.91524 0.94723 0.90309 1.44354 1.43988 1.18647 1.31937 1.17618 0.91884 0.87531 0.94914 1.20515 1.05009 0.94863 1.01402 1.20849 0.94917 0.97032 0.97133 1.20466 0.96169 0.97897 0.94096 1.18242 0.92794 0.89795 0.97536 1.21108 0.99725 1.03804 1.30083 0.92607 1.25018 0.98567 0.95239 0.95605 1.69950 1.34674 1.08022 1.40953 0.86629 0.83433 0.77446 0.80349 1.20236 1.21311 1.20232 1.20833 0.97307 0.92549 0.99163 1.20463 1.01241 1.00163 0.99682 0.88188 0.88243 0.87005 0.92359 0.91916 0.77271 0.87382 0.86617 0.95686 0.95684 0.92912 0.86561 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 14.32 29.02 0.42 -0.92 16 2 C -0.17 -1.47 9.63 -36.02 -0.35 -1.82 16 3 C 0.16 1.72 5.35 -5.19 -0.03 1.69 16 4 N -0.76 -9.90 5.73 -59.80 -0.34 -10.24 16 5 C 0.18 3.01 6.65 -83.79 -0.56 2.45 16 6 C -0.20 -3.46 9.31 -39.38 -0.37 -3.83 16 7 C -0.08 -1.65 9.69 -39.61 -0.38 -2.03 16 8 C -0.08 -1.92 5.07 -104.59 -0.53 -2.45 16 9 C 0.05 1.41 5.10 -29.04 -0.15 1.27 16 10 C -0.51 -14.64 9.09 -34.44 -0.31 -14.96 16 11 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 14 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 19 C -0.19 -3.39 9.90 -39.38 -0.39 -3.78 16 20 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 21 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 22 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 23 H 0.06 0.65 7.61 -51.93 -0.40 0.25 16 24 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 25 H 0.39 4.47 8.48 -40.82 -0.35 4.13 16 26 H 0.11 1.66 6.73 -52.48 -0.35 1.30 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 280.24 15.07 4.22 4.22 Total: -1.00 -30.69 280.24 -7.95 -38.64 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.41 Total: 1.58 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.13 Total: -24.85 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.39 Total: -36.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.69 -7.95 -38.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902228285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.562 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds