Wall clock time and date at job start Mon Mar 30 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 N 1.46506 * 109.47289 * 124.99944 * 3 2 1 5 5 C 1.39668 * 120.00181 * 180.02562 * 4 3 2 6 6 C 1.38907 * 120.07584 * 359.71907 * 5 4 3 7 7 C 1.38108 * 119.92754 * 179.77093 * 6 5 4 8 8 C 1.38283 * 120.07138 * 0.50866 * 7 6 5 9 9 C 1.50700 * 119.92567 * 179.72344 * 8 7 6 10 10 C 1.50699 * 109.47004 * 270.02519 * 9 8 7 11 11 H 1.08005 * 120.00240 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00044 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00220 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 120.00191 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47075 * 59.99835 * 14 12 10 16 16 H 1.48497 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46908 * 299.99580 * 14 12 10 18 18 C 1.38292 * 120.15211 * 359.74911 * 8 7 6 19 19 C 1.38103 * 120.06781 * 359.97438 * 18 8 7 20 20 H 1.07994 * 119.99868 * 179.97438 * 1 2 3 21 21 H 1.08001 * 119.99780 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47438 * 4.99726 * 3 2 1 24 24 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 25 25 H 0.97001 * 119.99251 * 0.02562 * 4 3 2 26 26 H 1.08004 * 120.03686 * 0.02562 * 6 5 4 27 27 H 1.07998 * 119.96672 * 180.25929 * 7 6 5 28 28 H 1.08997 * 109.47151 * 30.02383 * 9 8 7 29 29 H 1.08997 * 109.47346 * 150.02750 * 9 8 7 30 30 H 0.96998 * 120.00488 * 179.97438 * 13 12 10 31 31 H 1.07994 * 119.96476 * 180.02562 * 18 8 7 32 32 H 1.08003 * 120.03201 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 3.8067 2.4483 1.3408 6 6 3.7387 3.5314 0.4739 7 6 4.5405 4.6356 0.6865 8 6 5.4180 4.6593 1.7550 9 6 6.2959 5.8633 1.9804 10 6 7.5961 5.6824 1.2402 11 1 7.7696 4.7852 0.6645 12 6 8.5647 6.6619 1.2987 13 7 8.3537 7.7543 2.0001 14 14 10.1767 6.4375 0.3818 15 1 9.9037 6.2892 -1.0703 16 1 11.0417 7.6239 0.6038 17 1 10.8659 5.2212 0.8827 18 6 5.4922 3.5804 2.6170 19 6 4.6890 2.4755 2.4133 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3585 2.1317 0.0895 24 1 2.6213 1.4027 -0.9314 25 1 3.0450 0.5745 1.7352 26 1 3.0565 3.5119 -0.3632 27 1 4.4851 5.4799 0.0153 28 1 5.7897 6.7559 1.6129 29 1 6.4967 5.9722 3.0461 30 1 9.0353 8.4432 2.0416 31 1 6.1782 3.6023 3.4507 32 1 4.7477 1.6331 3.0867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902228285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:35 Heat of formation + Delta-G solvation = 17.084737 kcal Electronic energy + Delta-G solvation = -13389.700663 eV Core-core repulsion = 11121.262793 eV Total energy + Delta-G solvation = -2268.437870 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30608 -37.46381 -35.35493 -34.09478 -31.73139 -31.59340 -28.41696 -26.42521 -24.56712 -23.34834 -21.52991 -20.81994 -18.47538 -18.03724 -17.11529 -16.68544 -16.03970 -15.71055 -15.08725 -14.72171 -14.53868 -14.28265 -14.07618 -13.78553 -13.22944 -13.17149 -12.97859 -12.52214 -12.39726 -11.96323 -11.65302 -11.61743 -11.35904 -10.73549 -10.57252 -10.31397 -9.68839 -8.29971 -7.95883 -6.29757 0.66743 0.88091 1.24212 1.40251 1.43503 1.51794 2.42201 2.77799 3.13249 3.15474 3.91935 4.12132 4.20907 4.24644 4.50754 4.62117 4.72917 4.73542 4.78349 4.96753 5.08079 5.19659 5.37112 5.40341 5.55204 5.66703 5.70019 5.78183 5.81541 6.03868 6.23137 6.25446 6.57278 6.83419 6.97239 7.38547 8.92594 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.059357 B = 0.005068 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.609148 B = 5523.821202 C = 5615.662411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.151 3.849 4 N -0.743 5.743 5 C 0.195 3.805 6 C -0.196 4.196 7 C -0.090 4.090 8 C -0.124 4.124 9 C 0.063 3.937 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.089 4.089 19 C -0.191 4.191 20 H 0.118 0.882 21 H 0.101 0.899 22 H 0.122 0.878 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.405 0.595 26 H 0.134 0.866 27 H 0.110 0.890 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.112 0.888 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 -15.358 -3.449 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.027 3.973 4 N -0.375 5.375 5 C 0.092 3.908 6 C -0.218 4.218 7 C -0.109 4.109 8 C -0.126 4.126 9 C 0.026 3.974 10 C -0.566 4.566 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.108 4.108 19 C -0.213 4.213 20 H 0.136 0.864 21 H 0.119 0.881 22 H 0.140 0.860 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.241 0.759 26 H 0.152 0.848 27 H 0.128 0.872 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.472 -15.169 -3.574 20.600 hybrid contribution 1.059 0.257 -0.037 1.090 sum -12.413 -14.912 -3.611 19.736 Atomic orbital electron populations 1.24138 0.95535 1.03180 0.97207 1.22953 0.96425 0.97654 1.02831 1.20427 0.91252 0.96308 0.89276 1.44467 1.42986 1.17603 1.32493 1.17723 0.91216 0.88083 0.93750 1.20684 1.04681 0.94088 1.02340 1.20843 0.95323 0.98128 0.96572 1.20160 0.97969 0.97584 0.96848 1.17980 0.93079 0.90973 0.95341 1.21435 1.00964 1.03834 1.30359 0.92910 1.25961 1.02489 0.94742 0.96397 1.70082 1.36073 1.08890 1.42241 0.85494 0.78583 0.77807 0.79133 1.19295 1.20488 1.19261 1.20846 0.98143 0.93039 0.98780 1.20678 1.00341 0.99925 1.00341 0.86392 0.88083 0.85995 0.92233 0.92070 0.75910 0.84802 0.87188 0.98419 0.98362 0.92630 0.87010 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 14.32 67.78 0.97 -0.94 16 2 C -0.18 -2.54 9.63 25.65 0.25 -2.29 16 3 C 0.15 2.85 5.35 85.63 0.46 3.31 16 4 N -0.74 -16.95 5.73 -343.12 -1.96 -18.92 16 5 C 0.19 6.04 6.65 38.21 0.25 6.29 16 6 C -0.20 -6.63 9.31 22.40 0.21 -6.42 16 7 C -0.09 -3.74 9.69 22.25 0.22 -3.52 16 8 C -0.12 -5.82 5.07 -19.84 -0.10 -5.92 16 9 C 0.06 3.57 5.10 29.10 0.15 3.72 16 10 C -0.53 -31.46 9.09 25.60 0.23 -31.23 16 11 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 12 C 0.00 0.10 5.46 84.65 0.46 0.57 16 13 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 14 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 C -0.09 -3.68 9.69 22.25 0.22 -3.47 16 19 C -0.19 -6.33 9.90 22.40 0.22 -6.11 16 20 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 21 H 0.10 1.16 7.84 -2.91 -0.02 1.14 16 22 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 23 H 0.06 1.14 7.61 -2.39 -0.02 1.12 16 24 H 0.06 1.21 7.94 -2.38 -0.02 1.19 16 25 H 0.41 7.64 8.48 -92.71 -0.79 6.85 16 26 H 0.13 3.78 6.73 -2.91 -0.02 3.76 16 27 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 29 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -67.55 280.24 4.19 -63.37 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.31 Total: 11.68 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.53 Total: -46.01 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.68 Total: -76.55 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -67.55 4.19 -63.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902228285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.451 kcal (2) G-P(sol) polarization free energy of solvation -67.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds