Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00481 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00224 * 3 2 1 5 5 H 1.48505 * 109.46911 * 29.99984 * 3 2 1 6 6 H 1.48500 * 109.47193 * 149.99950 * 3 2 1 7 7 C 1.37882 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99730 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25508 * 312.95463 * 9 7 2 11 11 C 1.53506 * 114.17111 * 180.02562 * 9 7 2 12 12 N 1.47475 * 87.93524 * 220.14033 * 11 9 7 13 13 C 1.46905 * 111.00372 * 138.69806 * 12 11 9 14 14 C 1.52996 * 109.47327 * 170.00014 * 13 12 11 15 15 C 1.52997 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 13 17 17 F 1.39895 * 109.46931 * 180.02562 * 16 15 14 18 18 C 1.47481 * 87.83404 * 27.01239 * 12 11 9 19 19 H 0.97000 * 119.99604 * 359.97438 * 1 2 3 20 20 H 0.96700 * 114.00252 * 47.04947 * 10 9 7 21 21 H 1.08996 * 113.47913 * 105.37414 * 11 9 7 22 22 H 1.09005 * 113.53093 * 334.91820 * 11 9 7 23 23 H 1.09001 * 109.46440 * 50.00458 * 13 12 11 24 24 H 1.08992 * 109.47499 * 290.00875 * 13 12 11 25 25 H 1.09001 * 109.46993 * 60.00228 * 14 13 12 26 26 H 1.09004 * 109.47298 * 300.00642 * 14 13 12 27 27 H 1.09001 * 109.46832 * 60.00325 * 15 14 13 28 28 H 1.08993 * 109.47194 * 299.99846 * 15 14 13 29 29 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 31 31 H 1.08994 * 113.47875 * 87.75619 * 18 12 11 32 32 H 1.09007 * 113.47528 * 218.22197 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1944 -2.5407 0.9608 11 6 2.1495 -3.7438 -0.0005 12 7 1.2049 -4.3602 -0.9506 13 6 1.9204 -5.0901 -2.0058 14 6 0.9232 -5.9162 -2.8207 15 6 1.6686 -6.6769 -3.9192 16 6 0.6713 -7.5025 -4.7345 17 9 1.3529 -8.1984 -5.7385 18 6 0.8517 -2.9993 -1.3959 19 1 -0.4849 0.8401 0.0004 20 1 -0.3701 -1.7555 0.9590 21 1 2.1888 -4.2511 0.9634 22 1 3.1381 -3.5668 -0.4242 23 1 2.6573 -5.7535 -1.5529 24 1 2.4250 -4.3800 -2.6608 25 1 0.1863 -5.2528 -3.2735 26 1 0.4187 -6.6264 -2.1655 27 1 2.4052 -7.3403 -3.4659 28 1 2.1733 -5.9670 -4.5743 29 1 0.1661 -8.2124 -4.0795 30 1 -0.0651 -6.8387 -5.1877 31 1 1.4936 -2.6227 -2.1922 32 1 -0.2090 -2.8755 -1.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169631018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = -101.856120 kcal Electronic energy + Delta-G solvation = -14697.213295 eV Core-core repulsion = 11992.848538 eV Total energy + Delta-G solvation = -2704.364757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.55758 -40.94369 -36.84114 -35.30341 -34.09818 -30.90899 -28.32866 -26.71084 -25.80271 -23.07087 -22.02770 -20.49772 -19.22852 -17.41088 -17.12534 -16.84772 -16.64542 -16.24358 -16.01922 -15.53263 -15.14600 -14.76315 -14.02979 -13.88291 -13.40752 -13.22008 -12.86122 -12.79964 -12.59797 -12.35565 -12.24027 -12.15635 -11.69443 -11.57418 -11.40124 -11.12202 -10.64475 -10.08585 -9.67253 -8.26247 -6.44217 1.41999 1.44378 1.54659 2.36799 2.94750 3.14503 3.64628 3.84951 3.97970 4.06177 4.09837 4.20952 4.30901 4.38281 4.49376 4.58420 4.67989 4.71873 4.83000 4.94512 5.05275 5.13725 5.17073 5.35964 5.39708 5.53115 5.74640 5.96261 6.35264 6.61923 7.29222 7.55394 8.79133 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050374 B = 0.005599 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.705320 B = 4999.406195 C = 5174.473921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.216 3.784 10 O -0.584 6.584 11 C 0.012 3.988 12 N -0.477 5.477 13 C 0.015 3.985 14 C -0.098 4.098 15 C -0.143 4.143 16 C 0.059 3.941 17 F -0.237 7.237 18 C -0.009 4.009 19 H 0.275 0.725 20 H 0.384 0.616 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -8.713 -6.911 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.173 4.173 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.084 0.916 9 C 0.175 3.825 10 O -0.396 6.396 11 C -0.117 4.117 12 N -0.200 5.200 13 C -0.113 4.113 14 C -0.136 4.136 15 C -0.182 4.182 16 C 0.004 3.996 17 F -0.218 7.218 18 C -0.139 4.139 19 H 0.085 0.915 20 H 0.238 0.762 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.015 -9.693 -6.585 11.890 hybrid contribution 0.650 1.929 -0.491 2.094 sum 2.665 -7.764 -7.076 10.837 Atomic orbital electron populations 1.69372 1.07291 1.28737 1.50784 1.25835 0.95794 1.02839 0.92830 0.85383 0.78571 0.78220 0.78414 1.19796 1.20503 1.19306 1.21865 0.93888 0.91694 1.52242 0.91578 1.19770 0.85532 0.91902 0.85342 1.86008 1.45836 1.47783 1.59945 1.23964 0.95532 0.94956 0.97276 1.68787 1.27503 1.12624 1.11042 1.22757 0.96744 0.97913 0.93930 1.21239 0.97683 0.98427 0.96299 1.22052 0.98958 0.99569 0.97582 1.22146 0.94304 0.95535 0.87604 1.92720 1.82893 1.81806 1.64375 1.24492 0.99644 0.89220 1.00511 0.91525 0.76171 0.91200 0.90473 0.90347 0.94183 0.92493 0.90885 0.90272 0.91144 0.89097 0.89708 0.92181 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 11.02 21.45 0.24 -49.36 16 2 C 0.03 1.39 5.39 84.66 0.46 1.85 16 3 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -29.79 8.70 25.60 0.22 -29.57 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 11.04 1.56 -11.20 -0.02 11.02 16 10 O -0.58 -32.44 13.53 -148.98 -2.02 -34.46 16 11 C 0.01 0.50 7.09 83.57 0.59 1.09 16 12 N -0.48 -19.44 6.33 -928.35 -5.88 -25.32 16 13 C 0.02 0.47 4.82 86.30 0.42 0.89 16 14 C -0.10 -2.50 5.54 30.59 0.17 -2.34 16 15 C -0.14 -2.91 5.67 30.60 0.17 -2.74 16 16 C 0.06 1.07 7.55 71.98 0.54 1.62 16 17 F -0.24 -5.48 17.36 44.97 0.78 -4.70 16 18 C -0.01 -0.42 7.13 83.57 0.60 0.18 16 19 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 20 H 0.38 21.77 6.33 -74.06 -0.47 21.30 16 21 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 22 H 0.08 3.07 7.87 -2.38 -0.02 3.05 16 23 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 24 H 0.04 1.26 7.30 -2.39 -0.02 1.24 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.71 7.38 -2.39 -0.02 2.69 16 32 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -58.09 270.78 -1.07 -59.16 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.63 Total: 29.51 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.15 Total: -18.00 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -5.64 Total: -74.68 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -2.02 Total: -34.46 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -58.09 -1.07 -59.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169631018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.694 kcal (2) G-P(sol) polarization free energy of solvation -58.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds