Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31720 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48492 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 300.00105 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99708 * 3 2 1 7 7 C 1.38543 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00393 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00148 * 179.97438 * 9 7 2 11 11 N 1.30215 * 126.08986 * 359.69344 * 10 9 7 12 12 N 1.26104 * 117.72469 * 179.79955 * 11 10 9 13 13 C 1.30244 * 117.70911 * 0.50431 * 12 11 10 14 14 N 1.38668 * 126.09681 * 179.77032 * 13 12 11 15 15 N 1.36600 * 119.99892 * 359.95618 * 14 13 12 16 16 S 1.76473 * 126.09185 * 179.97438 * 10 9 7 17 17 H 0.97005 * 120.00059 * 0.02562 * 1 2 3 18 18 H 0.97001 * 120.00048 * 179.97438 * 14 13 12 19 19 H 1.00895 * 110.99950 * 180.02562 * 15 14 13 20 20 H 1.00902 * 111.00258 * 303.96110 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2513 1.6177 0.0000 4 1 3.7112 1.3464 0.0006 5 1 1.8925 2.3964 -1.2125 6 1 1.8925 2.3965 1.2125 7 6 2.0100 -1.1998 0.0005 8 1 3.0900 -1.1998 0.0001 9 16 1.1290 -2.7257 0.0005 10 6 2.4787 -3.8583 0.0005 11 7 3.7427 -3.5453 -0.0051 12 7 4.5805 -4.4878 -0.0002 13 6 4.1210 -5.7065 0.0000 14 7 4.8812 -6.8662 0.0004 15 7 6.2450 -6.7888 -0.0002 16 16 2.3584 -5.6189 0.0012 17 1 -0.4850 0.8401 -0.0004 18 1 4.4446 -7.7324 0.0009 19 1 6.6594 -7.7088 -0.0002 20 1 6.5760 -6.2435 -0.7820 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005827664.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 84.538348 kcal Electronic energy + Delta-G solvation = -10098.564794 eV Core-core repulsion = 7970.616311 eV Total energy + Delta-G solvation = -2127.948483 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.999 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.81438 -36.89510 -32.74229 -30.65611 -28.25800 -25.71840 -24.67597 -20.21615 -19.40212 -18.05497 -17.15846 -16.62026 -15.27423 -14.99209 -14.55961 -14.15804 -13.02831 -12.70562 -12.08650 -11.30389 -11.18607 -11.09309 -10.28219 -9.94608 -9.66601 -9.45349 -9.22805 -9.00759 -8.82016 -7.69454 -6.62011 -6.54027 -4.23906 1.24091 1.38681 1.95209 2.83381 3.15847 3.21524 3.28001 3.34921 3.57400 3.97990 4.81243 4.91060 5.01623 5.98535 6.03602 6.47794 7.42453 7.50934 8.05348 8.32319 8.98072 9.66924 10.53220 Molecular weight = 218.00amu Principal moments of inertia in cm(-1) A = 0.056812 B = 0.008059 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.736739 B = 3473.379612 C = 3954.296654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.108 0.892 9 S 0.182 5.818 10 C -0.005 4.005 11 N -0.267 5.267 12 N -0.305 5.305 13 C 0.253 3.747 14 N -0.550 5.550 15 N -0.590 5.590 16 S 0.009 5.991 17 H 0.276 0.724 18 H 0.413 0.587 19 H 0.352 0.648 20 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -11.578 -1.292 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.135 4.135 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.685 4.685 8 H 0.126 0.874 9 S 0.417 5.583 10 C -0.392 4.392 11 N -0.110 5.110 12 N -0.149 5.149 13 C -0.126 4.126 14 N -0.287 5.287 15 N -0.217 5.217 16 S 0.240 5.760 17 H 0.085 0.915 18 H 0.252 0.748 19 H 0.165 0.835 20 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.397 -10.952 -0.600 11.482 hybrid contribution 1.671 0.107 -0.938 1.919 sum 5.068 -10.845 -1.538 12.069 Atomic orbital electron populations 1.69995 1.06096 1.28629 1.45981 1.25133 0.95234 0.99899 0.93187 0.85853 0.80205 0.80118 0.78008 1.18753 1.20262 1.20238 1.23430 0.97573 0.89583 1.57897 0.87432 1.83495 0.98139 0.95550 1.81102 1.32041 1.02567 0.96308 1.08327 1.71371 0.96770 1.22199 1.20621 1.71012 1.28485 0.93830 1.21622 1.26065 0.89886 0.90726 1.05911 1.41721 0.99428 1.03253 1.84274 1.59993 0.91039 1.20327 1.50322 1.85173 1.03641 1.08074 1.79135 0.91457 0.74788 0.83470 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 13.22 55.48 0.73 -23.34 14 2 C 0.08 2.04 5.49 -17.49 -0.10 1.94 14 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 14 4 H -0.26 -6.01 7.11 56.52 0.40 -5.61 14 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 14 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 7 C -0.53 -14.88 9.36 30.84 0.29 -14.59 14 8 H 0.11 3.10 6.91 -52.49 -0.36 2.74 14 9 S 0.18 4.56 21.89 -107.50 -2.35 2.21 14 10 C -0.01 -0.12 7.82 52.08 0.41 0.29 14 11 N -0.27 -6.67 10.36 31.30 0.32 -6.34 14 12 N -0.30 -6.85 11.47 30.99 0.36 -6.49 14 13 C 0.25 4.65 8.62 -87.17 -0.75 3.90 14 14 N -0.55 -7.31 6.64 30.97 0.21 -7.11 14 15 N -0.59 -6.89 10.25 60.35 0.62 -6.27 14 16 S 0.01 0.17 23.53 -107.50 -2.53 -2.36 14 17 H 0.28 7.04 8.32 -40.82 -0.34 6.70 14 18 H 0.41 4.00 8.95 -185.15 -1.66 2.34 14 19 H 0.35 2.54 9.21 -181.37 -1.67 0.87 14 20 H 0.34 4.06 9.15 -181.36 -1.66 2.40 14 LS Contribution 222.05 15.07 3.35 3.35 Total: -1.00 -31.75 222.05 -8.96 -40.71 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.48 Total: -1.93 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.15 Total: -8.47 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 2.24 Total: -49.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -4.88 Total: -0.16 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.75 -8.96 -40.71 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005827664.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.247 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds