Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46906 * 269.99625 * 3 2 1 5 5 H 1.48491 * 109.47181 * 29.99891 * 3 2 1 6 6 H 1.48494 * 109.46969 * 150.00069 * 3 2 1 7 7 C 1.37880 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99652 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40532 * 66.46102 * 9 7 2 11 11 O 1.42098 * 106.40165 * 293.53766 * 9 7 2 12 12 C 1.76203 * 107.21347 * 179.97438 * 9 7 2 13 13 N 1.30585 * 125.44189 * 269.95310 * 12 9 7 14 14 N 1.40426 * 106.99346 * 180.02562 * 13 12 9 15 15 H 0.97001 * 126.82838 * 180.02562 * 14 13 12 16 16 C 1.34986 * 106.34812 * 0.02562 * 14 13 12 17 17 N 1.38328 * 126.07790 * 180.27172 * 16 14 13 18 18 N 1.31584 * 107.84689 * 359.97438 * 16 14 13 19 19 H 0.96996 * 119.99769 * 359.97438 * 1 2 3 20 20 H 0.96998 * 120.00123 * 179.71198 * 17 16 14 21 21 H 0.97005 * 120.00113 * 359.70328 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1674 -0.6493 1.2510 11 8 4.1682 -0.6499 -1.2485 12 6 4.2881 -2.8771 0.0025 13 7 4.5126 -3.5994 1.0670 14 7 4.9073 -4.8721 0.6236 15 1 5.1433 -5.6331 1.1768 16 6 4.8930 -4.8258 -0.7254 17 7 5.2102 -5.8665 -1.5796 18 7 4.5174 -3.6165 -1.0834 19 1 -0.4849 0.8400 0.0004 20 1 5.1660 -5.7365 -2.5398 21 1 5.4770 -6.7264 -1.2183 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008015648.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = -12.839991 kcal Electronic energy + Delta-G solvation = -12725.228656 eV Core-core repulsion = 10150.304660 eV Total energy + Delta-G solvation = -2574.923996 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.026 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.22547 -37.74944 -36.59973 -36.05543 -35.20984 -33.77973 -30.94901 -28.61966 -24.98828 -23.03384 -20.81196 -20.05304 -19.16325 -18.17712 -17.67265 -17.23596 -16.95822 -16.64329 -16.05339 -15.45446 -14.94206 -13.63669 -13.41410 -13.27732 -12.88333 -12.75175 -12.66527 -12.58866 -11.73322 -11.66167 -11.39693 -11.29529 -11.15968 -9.66426 -8.95645 -7.57608 -0.36126 0.18723 1.11997 1.17584 1.23310 1.29580 1.49039 1.95696 2.41000 2.52868 2.77706 3.19302 3.28339 4.39173 4.50488 4.84121 5.35751 5.53284 5.96321 6.08952 6.44252 6.47858 7.02291 8.21936 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.056259 B = 0.010538 C = 0.010232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.579437 B = 2656.532777 C = 2735.879535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.111 3.889 3 Si 0.824 3.176 4 H -0.231 1.231 5 H -0.211 1.211 6 H -0.224 1.224 7 C -1.012 5.012 8 H 0.104 0.896 9 S 2.612 3.388 10 O -0.983 6.983 11 O -0.978 6.978 12 C -0.251 4.251 13 N -0.248 5.248 14 N -0.485 5.485 15 H 0.461 0.539 16 C 0.528 3.472 17 N -0.788 5.788 18 N -0.552 5.552 19 H 0.297 0.703 20 H 0.436 0.564 21 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 -11.404 -1.448 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.107 4.107 3 Si 0.640 3.360 4 H -0.154 1.154 5 H -0.133 1.133 6 H -0.146 1.146 7 C -1.146 5.146 8 H 0.122 0.878 9 S 2.791 3.209 10 O -0.979 6.979 11 O -0.974 6.974 12 C -0.617 4.617 13 N -0.082 5.082 14 N -0.215 5.215 15 H 0.312 0.688 16 C 0.159 3.841 17 N -0.350 5.350 18 N -0.293 5.293 19 H 0.107 0.893 20 H 0.271 0.729 21 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 9.267 -10.270 -1.039 13.872 hybrid contribution -0.256 -1.236 0.064 1.264 sum 9.011 -11.506 -0.975 14.647 Atomic orbital electron populations 1.69975 1.07374 1.31007 1.39183 1.25152 0.95772 1.01497 0.88261 0.87498 0.83117 0.82090 0.83344 1.15372 1.13274 1.14644 1.30083 1.14547 1.02265 1.67739 0.87828 1.00815 0.76880 0.69934 0.73248 1.93459 1.85293 1.74388 1.44737 1.93389 1.85109 1.74351 1.44570 1.37173 1.10293 1.23246 0.91028 1.77905 1.19319 0.90418 1.20525 1.47593 1.56388 1.12437 1.05084 0.68787 1.20751 0.91706 0.89838 0.81805 1.40983 1.76345 1.09626 1.08003 1.70642 1.28523 1.02058 1.28114 0.89271 0.72935 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.28 13.96 21.45 0.30 -48.98 14 2 C 0.11 6.48 5.47 84.66 0.46 6.95 14 3 Si 0.82 40.76 26.54 68.60 1.82 42.58 14 4 H -0.23 -10.93 7.11 99.48 0.71 -10.22 14 5 H -0.21 -9.00 7.11 99.48 0.71 -8.29 14 6 H -0.22 -11.33 5.61 99.48 0.56 -10.77 14 7 C -1.01 -60.01 10.12 67.73 0.69 -59.32 14 8 H 0.10 6.36 8.06 -2.91 -0.02 6.34 14 9 S 2.61 141.88 4.05 -56.49 -0.23 141.65 14 10 O -0.98 -55.14 15.90 -128.00 -2.04 -57.17 14 11 O -0.98 -55.03 16.71 -128.00 -2.14 -57.17 14 12 C -0.25 -11.84 7.97 180.76 1.44 -10.40 14 13 N -0.25 -10.33 12.78 -59.13 -0.76 -11.09 14 14 N -0.49 -13.64 7.47 -58.89 -0.44 -14.08 14 15 H 0.46 7.59 8.96 -213.11 -1.91 5.68 14 16 C 0.53 15.35 9.49 260.78 2.48 17.83 14 17 N -0.79 -11.49 9.06 -58.86 -0.53 -12.03 14 18 N -0.55 -23.07 11.23 -199.44 -2.24 -25.31 14 19 H 0.30 15.31 8.31 -92.71 -0.77 14.54 14 20 H 0.44 5.43 8.95 -92.71 -0.83 4.60 14 21 H 0.43 2.26 8.95 -92.70 -0.83 1.43 14 Total: -1.00 -79.68 213.81 -3.58 -83.26 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.39 Total: 3.30 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 5.07 Total: -44.95 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.67 Total: -111.48 kcal Atomic # 8 Polarization: -110.17 SS G_CDS: -4.17 Total: -114.35 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.82 Total: 42.58 kcal Atomic # 16 Polarization: 141.88 SS G_CDS: -0.23 Total: 141.65 kcal Total: -79.68 -3.58 -83.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008015648.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.418 kcal (2) G-P(sol) polarization free energy of solvation -79.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds