Wall clock time and date at job start Mon Mar 30 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35947 * 117.00125 * 2 1 4 4 C 1.38427 * 120.03817 * 0.02562 * 3 2 1 5 5 C 1.38525 * 120.57352 * 180.22914 * 4 3 2 6 6 C 1.37970 * 120.20402 * 359.46596 * 5 4 3 7 7 C 1.39119 * 119.75652 * 0.54305 * 6 5 4 8 8 C 1.47876 * 134.00083 * 179.71040 * 7 6 5 9 9 C 1.40953 * 127.31019 * 0.02562 * 8 7 6 10 10 H 1.07994 * 119.99916 * 0.02562 * 9 8 7 11 11 C 1.39770 * 119.99762 * 180.02562 * 9 8 7 12 12 N 1.31014 * 120.00056 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99739 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47152 * 59.99925 * 13 11 9 15 15 H 1.48503 * 109.46965 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47233 * 299.99780 * 13 11 9 17 17 C 1.38668 * 105.37771 * 180.02562 * 8 7 6 18 18 O 1.33906 * 109.31145 * 359.97438 * 17 8 7 19 19 C 1.35021 * 111.55471 * 0.02562 * 18 17 8 20 20 H 1.09001 * 109.47195 * 299.99171 * 1 2 3 21 21 H 1.08999 * 109.47426 * 59.99704 * 1 2 3 22 22 H 1.09002 * 109.47366 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.70947 * 359.94408 * 4 3 2 24 24 H 1.08002 * 119.89419 * 179.71555 * 5 4 3 25 25 H 1.08005 * 120.12520 * 180.25646 * 6 5 4 26 26 H 0.96997 * 120.00053 * 180.02562 * 12 11 9 27 27 H 1.08004 * 125.34583 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2930 2.3727 0.0005 5 6 1.9104 3.6128 -0.0042 6 6 3.2871 3.7028 0.0015 7 6 4.0549 2.5427 0.0007 8 6 5.5089 2.2731 0.0002 9 6 6.5533 3.2196 0.0010 10 1 6.3253 4.2753 0.0025 11 6 7.8840 2.7920 -0.0002 12 7 8.1605 1.5114 -0.0025 13 14 9.2680 4.0464 0.0015 14 1 9.1651 4.8954 1.2156 15 1 10.5750 3.3413 0.0005 16 1 9.1644 4.8996 -1.2095 17 6 5.6267 0.8914 -0.0012 18 8 4.4052 0.3428 -0.0009 19 6 3.4382 1.2852 0.0000 20 1 -0.3634 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 0.2147 2.3115 0.0000 24 1 1.3121 4.5120 -0.0084 25 1 3.7671 4.6703 0.0020 26 1 9.0839 1.2146 -0.0029 27 1 6.5576 0.3437 -0.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034611830.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:56 Heat of formation + Delta-G solvation = -40.914942 kcal Electronic energy + Delta-G solvation = -14024.322049 eV Core-core repulsion = 11519.817368 eV Total energy + Delta-G solvation = -2504.504681 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.56958 -40.16234 -37.56142 -35.91459 -32.62061 -30.91520 -29.73182 -28.02635 -27.25837 -23.67391 -22.71870 -21.86567 -19.53502 -18.39761 -17.52658 -17.04003 -16.94403 -16.57434 -15.94312 -15.80998 -15.56029 -14.46485 -13.90582 -13.77041 -13.29990 -13.03083 -13.00508 -12.84999 -12.34119 -12.07854 -12.03549 -11.80902 -11.68172 -11.41478 -10.17619 -9.15998 -8.67137 -8.59844 -6.31269 0.29095 0.60378 1.36707 1.40172 1.53762 2.02457 2.22263 2.38509 2.58718 2.83469 3.39168 4.04401 4.09360 4.25060 4.41776 4.45842 4.56150 4.59227 4.74820 4.89387 5.08355 5.31214 5.40549 5.53692 5.67115 5.91987 5.98176 6.29031 6.49959 6.69551 6.90124 7.13177 8.42785 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.054281 B = 0.008030 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.707993 B = 3486.271348 C = 3986.833472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.346 6.346 3 C 0.109 3.891 4 C -0.188 4.188 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.138 4.138 8 C -0.030 4.030 9 C -0.452 4.452 10 H 0.081 0.919 11 C 0.011 3.989 12 N -0.853 5.853 13 Si 1.004 2.996 14 H -0.260 1.260 15 H -0.269 1.269 16 H -0.260 1.260 17 C -0.188 4.188 18 O -0.224 6.224 19 C -0.014 4.014 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.174 0.826 24 H 0.168 0.832 25 H 0.128 0.872 26 H 0.289 0.711 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 3.072 -0.003 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.064 3.936 4 C -0.206 4.206 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.140 4.140 8 C -0.032 4.032 9 C -0.483 4.483 10 H 0.099 0.901 11 C -0.198 4.198 12 N -0.484 5.484 13 Si 0.824 3.176 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.184 1.184 17 C -0.253 4.253 18 O -0.128 6.128 19 C -0.063 4.063 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.135 0.865 23 H 0.191 0.809 24 H 0.185 0.815 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.370 2.454 -0.004 10.656 hybrid contribution 0.867 0.212 0.001 0.892 sum -9.503 2.666 -0.002 9.870 Atomic orbital electron populations 1.23382 0.76042 1.05547 1.02634 1.86092 1.23959 1.26615 1.89405 1.18045 0.86164 0.86554 1.02817 1.21180 1.00734 0.90023 1.08664 1.21064 0.92872 0.98210 1.00774 1.20644 0.94177 0.96256 1.02499 1.20336 0.94332 0.93663 1.05661 1.19262 0.89961 0.93359 1.00662 1.19039 0.90334 0.93845 1.45073 0.90128 1.26787 1.02265 0.98180 0.92539 1.69363 1.22188 1.16931 1.39871 0.84910 0.75344 0.77489 0.79864 1.18458 1.19290 1.18447 1.25503 0.83624 0.94174 1.22045 1.83658 1.15108 1.36020 1.78020 1.19448 0.89053 0.88504 1.09272 0.91188 0.91193 0.86475 0.80926 0.81497 0.85440 0.90052 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 15 2 O -0.35 -13.01 10.50 -92.95 -0.98 -13.98 15 3 C 0.11 4.57 6.70 22.59 0.15 4.72 15 4 C -0.19 -6.05 9.02 22.38 0.20 -5.85 15 5 C -0.11 -3.61 10.04 22.27 0.22 -3.39 15 6 C -0.12 -4.93 10.09 22.42 0.23 -4.71 15 7 C -0.14 -7.28 6.36 -20.07 -0.13 -7.41 15 8 C -0.03 -1.77 6.13 -19.96 -0.12 -1.89 15 9 C -0.45 -25.56 9.44 23.31 0.22 -25.34 15 10 H 0.08 4.27 7.84 -2.91 -0.02 4.25 15 11 C 0.01 0.57 5.49 85.19 0.47 1.04 15 12 N -0.85 -46.37 10.38 21.80 0.23 -46.14 15 13 Si 1.00 39.60 29.56 68.60 2.03 41.63 15 14 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 15 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 17 C -0.19 -11.29 11.08 67.92 0.75 -10.53 15 18 O -0.22 -13.06 10.52 -5.91 -0.06 -13.12 15 19 C -0.01 -0.75 7.30 22.99 0.17 -0.58 15 20 H 0.07 1.29 7.66 -2.39 -0.02 1.27 15 21 H 0.07 1.28 7.66 -2.39 -0.02 1.27 15 22 H 0.12 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.17 3.81 6.26 -2.91 -0.02 3.79 15 24 H 0.17 3.76 8.06 -2.91 -0.02 3.73 15 25 H 0.13 4.93 8.06 -2.91 -0.02 4.90 15 26 H 0.29 14.15 8.30 -92.71 -0.77 13.38 15 27 H 0.22 12.92 5.72 -2.91 -0.02 12.91 15 Total: -1.00 -69.96 241.42 5.68 -64.28 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.19 Total: 19.78 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 3.27 Total: -52.43 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.23 Total: -46.14 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.04 Total: -27.11 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -69.96 5.68 -64.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034611830.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.365 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds