Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35963 * 116.99724 * 2 1 4 4 C 1.38835 * 119.77176 * 0.02562 * 3 2 1 5 5 C 1.39685 * 120.08968 * 179.97438 * 4 3 2 6 6 C 1.46836 * 134.14756 * 179.97438 * 5 4 3 7 7 C 1.34063 * 106.12645 * 180.02562 * 6 5 4 8 8 O 1.34383 * 110.04317 * 0.02562 * 7 6 5 9 9 C 1.34579 * 110.92372 * 359.97438 * 8 7 6 10 10 C 1.41332 * 133.35188 * 179.97438 * 9 8 7 11 11 C 1.41063 * 120.23716 * 0.04659 * 10 9 8 12 12 H 1.07998 * 120.00218 * 25.02730 * 11 10 9 13 13 C 1.39939 * 119.99867 * 205.02396 * 11 10 9 14 14 N 1.30855 * 119.99909 * 17.96101 * 13 11 10 15 15 Si 1.86796 * 120.00028 * 197.96733 * 13 11 10 16 16 H 1.48505 * 109.47526 * 94.50953 * 15 13 11 17 17 H 1.48501 * 109.47219 * 214.50873 * 15 13 11 18 18 H 1.48497 * 109.46982 * 334.50934 * 15 13 11 19 19 C 1.38319 * 119.77121 * 179.72596 * 3 2 1 20 20 H 1.09007 * 109.47319 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47591 * 299.99702 * 1 2 3 22 22 H 1.09005 * 109.47826 * 60.00262 * 1 2 3 23 23 H 1.07996 * 119.94811 * 359.97438 * 4 3 2 24 24 H 1.08003 * 126.93733 * 0.04594 * 6 5 4 25 25 H 1.08003 * 124.97516 * 179.97438 * 7 6 5 26 26 H 0.97001 * 120.00054 * 179.97438 * 14 13 11 27 27 H 1.07998 * 119.83228 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2853 2.3728 0.0005 5 6 1.9125 3.6209 0.0011 6 6 1.4302 5.0078 0.0012 7 6 2.5244 5.7825 0.0013 8 8 3.6298 5.0183 0.0006 9 6 3.3103 3.7110 0.0006 10 6 4.0782 2.5245 -0.0004 11 6 5.4873 2.5904 -0.0008 12 1 5.9873 3.4619 0.3953 13 6 6.2374 1.5265 -0.5143 14 7 5.6712 0.6456 -1.2990 15 14 8.0467 1.3637 -0.0795 16 1 8.1961 0.4554 1.0859 17 1 8.7864 0.8056 -1.2400 18 1 8.5961 2.7005 0.2612 19 6 3.4277 1.2784 0.0057 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5138 -0.8900 23 1 0.2071 2.3109 0.0005 24 1 0.4017 5.3373 0.0016 25 1 2.5183 6.8625 0.0010 26 1 6.1912 -0.0917 -1.6553 27 1 4.0096 0.3687 0.0098 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039090286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -37.560571 kcal Electronic energy + Delta-G solvation = -14153.730001 eV Core-core repulsion = 11649.370776 eV Total energy + Delta-G solvation = -2504.359225 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.83789 -40.14456 -37.46758 -35.36553 -33.11572 -30.80950 -29.95263 -27.95294 -27.04616 -23.33649 -22.77473 -21.71537 -19.47534 -18.17478 -18.11379 -17.38929 -16.73707 -16.54003 -16.27448 -15.66628 -14.85834 -14.48646 -13.98470 -13.51737 -13.35897 -13.22079 -12.95587 -12.82165 -12.63905 -12.36587 -11.94395 -11.53548 -11.36646 -11.17025 -10.48854 -8.94862 -8.84500 -8.60063 -6.44647 0.47742 0.98825 1.36718 1.42103 1.53102 1.81295 2.17982 2.38161 2.63591 2.73186 3.49856 3.92344 4.23887 4.43653 4.45161 4.55904 4.66167 4.73813 4.80069 4.99505 5.14659 5.32399 5.47370 5.66743 5.73619 5.86319 6.01889 6.21755 6.51137 6.72562 6.75705 6.98724 8.22012 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.012186 C = 0.008268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.072638 B = 2297.217441 C = 3385.717250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.140 3.860 4 C -0.306 4.306 5 C -0.090 4.090 6 C -0.246 4.246 7 C -0.001 4.001 8 O -0.211 6.211 9 C -0.094 4.094 10 C 0.133 3.867 11 C -0.482 4.482 12 H 0.080 0.920 13 C 0.035 3.965 14 N -0.808 5.808 15 Si 0.992 3.008 16 H -0.258 1.258 17 H -0.262 1.262 18 H -0.257 1.257 19 C -0.239 4.239 20 H 0.120 0.880 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.129 0.871 24 H 0.177 0.823 25 H 0.249 0.751 26 H 0.294 0.706 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 2.910 1.684 5.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.259 6.259 3 C 0.095 3.905 4 C -0.326 4.326 5 C -0.092 4.092 6 C -0.265 4.265 7 C -0.066 4.066 8 O -0.113 6.113 9 C -0.140 4.140 10 C 0.130 3.870 11 C -0.510 4.510 12 H 0.098 0.902 13 C -0.183 4.183 14 N -0.432 5.432 15 Si 0.811 3.189 16 H -0.183 1.183 17 H -0.186 1.186 18 H -0.180 1.180 19 C -0.259 4.259 20 H 0.138 0.862 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.147 0.853 24 H 0.194 0.806 25 H 0.265 0.735 26 H 0.105 0.895 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.491 2.581 1.520 5.398 hybrid contribution 0.194 -0.131 -0.035 0.237 sum -4.297 2.450 1.485 5.164 Atomic orbital electron populations 1.23176 0.77466 1.04737 1.01508 1.85986 1.22900 1.27590 1.89463 1.18776 0.91896 0.83786 0.96002 1.19963 0.98574 0.89661 1.24367 1.19901 0.92535 0.94808 1.01923 1.22701 1.00804 0.89747 1.13276 1.24785 0.82737 0.98297 1.00815 1.83742 1.35546 1.15785 1.76210 1.20172 0.94054 0.82967 1.16850 1.16631 0.93426 0.86744 0.90231 1.19767 0.91163 1.03979 1.36110 0.90205 1.26909 1.06447 0.93315 0.91594 1.69903 1.41047 1.11312 1.20929 0.85056 0.74664 0.79937 0.79262 1.18262 1.18582 1.18035 1.20055 0.90475 0.97004 1.18399 0.86166 0.92460 0.92838 0.85309 0.80578 0.73507 0.89467 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 15 2 O -0.34 -15.56 10.49 -93.14 -0.98 -16.54 15 3 C 0.14 7.20 6.67 22.43 0.15 7.35 15 4 C -0.31 -14.53 9.09 22.76 0.21 -14.33 15 5 C -0.09 -4.41 6.39 -20.23 -0.13 -4.54 15 6 C -0.25 -9.26 11.15 23.57 0.26 -9.00 15 7 C 0.00 -0.03 11.97 66.87 0.80 0.77 15 8 O -0.21 -10.11 10.57 -5.98 -0.06 -10.17 15 9 C -0.09 -5.10 7.15 23.48 0.17 -4.94 15 10 C 0.13 7.73 5.57 -21.26 -0.12 7.62 15 11 C -0.48 -27.27 9.04 23.38 0.21 -27.06 15 12 H 0.08 4.41 7.91 -2.91 -0.02 4.39 15 13 C 0.03 1.79 5.12 85.25 0.44 2.22 15 14 N -0.81 -43.36 11.01 21.83 0.24 -43.12 15 15 Si 0.99 38.55 29.60 68.60 2.03 40.58 15 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 17 H -0.26 -9.49 7.11 99.48 0.71 -8.79 15 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 19 C -0.24 -13.69 8.60 22.86 0.20 -13.50 15 20 H 0.12 2.84 8.14 -2.38 -0.02 2.82 15 21 H 0.06 1.65 7.65 -2.39 -0.02 1.63 15 22 H 0.05 1.59 7.65 -2.38 -0.02 1.57 15 23 H 0.13 5.18 6.26 -2.91 -0.02 5.16 15 24 H 0.18 5.08 8.06 -2.91 -0.02 5.06 15 25 H 0.25 5.37 8.06 -2.91 -0.02 5.34 15 26 H 0.29 14.06 8.30 -92.71 -0.77 13.29 15 27 H 0.11 6.84 6.20 -2.91 -0.02 6.83 15 Total: -1.00 -69.14 241.74 5.72 -63.43 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.19 Total: 19.30 kcal Atomic # 6 Polarization: -56.78 SS G_CDS: 3.30 Total: -53.48 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.24 Total: -43.12 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.04 Total: -26.71 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -69.14 5.72 -63.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039090286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.865 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds