Wall clock time and date at job start Mon Mar 30 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35592 * 116.99851 * 2 1 4 4 C 1.39104 * 119.99825 * 359.97282 * 3 2 1 5 5 C 1.37632 * 120.48426 * 179.74558 * 4 3 2 6 6 C 1.40760 * 120.45653 * 0.55285 * 5 4 3 7 7 C 1.40918 * 120.20786 * 179.74412 * 6 5 4 8 8 H 1.08000 * 120.00461 * 206.60939 * 7 6 5 9 9 C 1.39844 * 120.00005 * 26.59834 * 7 6 5 10 10 N 1.30937 * 120.00262 * 204.23911 * 9 7 6 11 11 Si 1.86802 * 119.99627 * 24.24259 * 9 7 6 12 12 H 1.48500 * 109.47300 * 263.32830 * 11 9 7 13 13 H 1.48497 * 109.47290 * 23.33785 * 11 9 7 14 14 H 1.48509 * 109.46910 * 143.33335 * 11 9 7 15 15 C 1.41427 * 119.59028 * 359.46233 * 6 5 4 16 16 O 1.34529 * 133.35188 * 180.21524 * 15 6 5 17 17 C 1.34394 * 110.90378 * 180.02562 * 16 15 6 18 18 C 1.34113 * 109.97795 * 0.02562 * 17 16 15 19 19 C 1.39835 * 119.18535 * 0.25586 * 15 6 5 20 20 H 1.09010 * 109.47324 * 300.00609 * 1 2 3 21 21 H 1.08997 * 109.47568 * 60.00095 * 1 2 3 22 22 H 1.08994 * 109.47263 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.75556 * 0.04883 * 4 3 2 24 24 H 1.08001 * 119.77359 * 180.28679 * 5 4 3 25 25 H 0.96999 * 120.00185 * 353.21202 * 10 9 7 26 26 H 1.08002 * 125.00753 * 179.97438 * 17 16 15 27 27 H 1.07994 * 126.94424 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2868 2.3747 -0.0006 5 6 1.9012 3.6063 0.0047 6 6 3.3054 3.7032 -0.0010 7 6 3.9290 4.9669 -0.0010 8 1 4.9161 5.0821 -0.4238 9 6 3.2695 6.0720 0.5463 10 7 3.5819 7.2814 0.1536 11 14 1.9430 5.8227 1.8377 12 1 0.6085 5.8403 1.1864 13 1 2.1477 4.5154 2.5117 14 1 2.0182 6.9143 2.8417 15 6 4.0868 2.5243 -0.0006 16 8 5.4124 2.2950 -0.0014 17 6 5.6709 0.9761 -0.0011 18 6 4.5221 0.2841 -0.0007 19 6 3.4459 1.2815 -0.0001 20 1 -0.3634 0.5140 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.2086 2.3135 -0.0002 24 1 1.3017 4.5047 0.0089 25 1 4.3353 7.4186 -0.4417 26 1 6.6581 0.5382 -0.0020 27 1 4.4115 -0.7902 -0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039090287.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:48 Heat of formation + Delta-G solvation = -19.007165 kcal Electronic energy + Delta-G solvation = -14257.229532 eV Core-core repulsion = 11753.674843 eV Total energy + Delta-G solvation = -2503.554689 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.34455 -38.44926 -35.98584 -33.50450 -31.65207 -29.35532 -28.53644 -26.88767 -24.19305 -21.81175 -21.44473 -19.87877 -18.28784 -17.23537 -16.30644 -15.52641 -15.24735 -14.71893 -14.52496 -14.12075 -13.61976 -13.19838 -12.42314 -12.00723 -11.86793 -11.71868 -11.43947 -10.90831 -10.86301 -10.55712 -10.09151 -9.84419 -9.57918 -9.12167 -8.82180 -7.66424 -7.45260 -6.94015 -4.43534 2.09046 2.50112 3.11098 3.23759 3.38035 3.53676 3.82741 3.97918 4.16824 4.43048 5.21237 5.33249 5.54252 5.61196 5.77651 5.84141 5.94907 6.09684 6.29582 6.46539 6.72294 6.90892 7.14012 7.35921 7.42527 7.55221 7.59365 7.93331 8.22208 8.32982 8.50841 8.68081 9.92715 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.012763 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.721734 B = 2193.335737 C = 3024.266753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.326 6.326 3 C 0.020 3.980 4 C -0.150 4.150 5 C -0.229 4.229 6 C 0.101 3.899 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.044 3.956 10 N -0.807 5.807 11 Si 1.070 2.930 12 H -0.275 1.275 13 H -0.261 1.261 14 H -0.287 1.287 15 C 0.005 3.995 16 O -0.186 6.186 17 C -0.026 4.026 18 C -0.213 4.213 19 C -0.112 4.112 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.084 0.916 23 H 0.109 0.891 24 H 0.116 0.884 25 H 0.288 0.712 26 H 0.193 0.807 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -8.549 1.004 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.241 6.241 3 C -0.024 4.024 4 C -0.169 4.169 5 C -0.249 4.249 6 C 0.098 3.902 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.176 4.176 10 N -0.429 5.429 11 Si 0.896 3.104 12 H -0.202 1.202 13 H -0.185 1.185 14 H -0.215 1.215 15 C -0.042 4.042 16 O -0.087 6.087 17 C -0.092 4.092 18 C -0.233 4.233 19 C -0.114 4.114 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.102 0.898 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.100 0.900 26 H 0.210 0.790 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.419 -7.604 1.851 8.540 hybrid contribution 0.960 -0.819 -1.114 1.683 sum -2.459 -8.423 0.737 8.806 Atomic orbital electron populations 1.22767 0.80631 1.02026 1.00578 1.85813 1.19327 1.28038 1.90914 1.17730 0.89028 0.83399 1.12234 1.20578 0.97867 0.92109 1.06388 1.20346 0.92587 0.96025 1.15923 1.16671 0.90103 0.89576 0.93834 1.20455 1.04788 0.93153 1.34933 0.90231 1.27306 1.00841 0.91591 0.97857 1.70561 1.22468 1.24028 1.25829 0.83611 0.74592 0.76846 0.75396 1.20170 1.18548 1.21470 1.19737 0.79738 0.94634 1.10111 1.83826 1.24509 1.24791 1.75531 1.23663 0.99378 0.81064 1.05095 1.22265 0.91280 0.99033 1.10695 1.18865 0.91103 0.92954 1.08438 0.93691 0.93697 0.89772 0.87350 0.86610 0.90036 0.79009 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.81 101.05 0.99 1.52 15 2 O -0.33 -6.58 10.49 -18.47 -0.19 -6.77 15 3 C 0.02 0.45 6.74 -38.47 -0.26 0.19 15 4 C -0.15 -3.37 9.01 -39.48 -0.36 -3.72 15 5 C -0.23 -5.62 7.35 -38.85 -0.29 -5.91 15 6 C 0.10 2.69 5.14 -106.72 -0.55 2.14 15 7 C -0.51 -13.88 9.37 -37.97 -0.36 -14.24 15 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 15 9 C 0.04 1.17 5.32 -17.33 -0.09 1.08 15 10 N -0.81 -21.54 13.66 55.54 0.76 -20.78 15 11 Si 1.07 24.16 25.02 -169.99 -4.25 19.91 15 12 H -0.28 -5.83 6.68 56.52 0.38 -5.45 15 13 H -0.26 -5.94 7.04 56.52 0.40 -5.54 15 14 H -0.29 -6.24 7.11 56.52 0.40 -5.84 15 15 C 0.01 0.13 7.14 -37.77 -0.27 -0.14 15 16 O -0.19 -4.37 10.57 4.84 0.05 -4.32 15 17 C -0.03 -0.48 11.97 29.28 0.35 -0.13 15 18 C -0.21 -4.26 11.15 -37.61 -0.42 -4.68 15 19 C -0.11 -2.68 6.33 -105.08 -0.67 -3.34 15 20 H 0.04 0.63 7.65 -51.92 -0.40 0.24 15 21 H 0.04 0.63 7.65 -51.93 -0.40 0.23 15 22 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.11 2.05 6.27 -52.49 -0.33 1.72 15 24 H 0.12 2.75 4.74 -52.49 -0.25 2.50 15 25 H 0.29 7.49 8.73 -40.82 -0.36 7.14 15 26 H 0.19 2.51 8.06 -52.49 -0.42 2.09 15 27 H 0.14 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 237.25 15.07 3.58 3.58 Total: -1.00 -29.88 237.25 -4.22 -34.09 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -2.24 Total: 1.51 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.91 Total: -27.21 kcal Atomic # 7 Polarization: -21.54 SS G_CDS: 0.76 Total: -20.78 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.14 Total: -11.09 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.25 Total: 19.91 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.88 -4.22 -34.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039090287.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.087 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds