Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86793 * 120.00462 * 2 1 4 4 H 1.48499 * 109.47329 * 85.55125 * 3 2 1 5 5 H 1.48494 * 109.47389 * 205.55689 * 3 2 1 6 6 H 1.48506 * 109.46640 * 325.55550 * 3 2 1 7 7 C 1.39950 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99737 * 163.52657 * 7 2 1 9 9 C 1.41328 * 120.00016 * 343.51988 * 7 2 1 10 10 C 1.41061 * 121.04386 * 335.55609 * 9 7 2 11 11 N 1.31933 * 118.81157 * 179.75861 * 10 9 7 12 12 C 1.32169 * 121.10541 * 0.52990 * 11 10 9 13 13 Cl 1.73606 * 118.81962 * 179.69893 * 12 11 10 14 14 N 1.32095 * 122.35676 * 359.71971 * 12 11 10 15 15 C 1.32082 * 121.04684 * 0.02562 * 14 12 11 16 16 Cl 1.73593 * 120.61865 * 179.97438 * 15 14 12 17 17 H 0.96996 * 119.99661 * 0.02562 * 1 2 3 18 18 H 1.07998 * 120.59911 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3960 2.1006 1.3958 5 1 3.5838 1.4147 -0.6040 6 1 1.4901 2.6236 -0.7919 7 6 2.0081 -1.2120 0.0005 8 1 3.0548 -1.2314 -0.2647 9 6 1.3450 -2.4106 0.3483 10 6 0.1933 -2.3949 1.1626 11 7 -0.3937 -3.5395 1.4560 12 6 0.0861 -4.6871 1.0092 13 17 -0.7290 -6.1587 1.4382 14 7 1.1638 -4.7545 0.2484 15 6 1.8185 -3.6627 -0.1037 16 17 3.2340 -3.7643 -1.1034 17 1 -0.4849 0.8400 -0.0004 18 1 -0.2035 -1.4623 1.5357 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368426.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -4.668817 kcal Electronic energy + Delta-G solvation = -10288.546986 eV Core-core repulsion = 7984.516932 eV Total energy + Delta-G solvation = -2304.030054 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 217.971 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.10185 -37.58092 -37.24591 -36.29248 -34.07473 -32.42770 -27.91094 -24.93204 -24.09503 -19.68811 -18.59614 -18.40426 -16.99383 -15.86710 -15.35762 -15.18052 -14.47856 -13.81907 -13.40651 -13.23319 -12.86970 -12.39336 -12.29692 -12.15549 -11.98967 -11.42126 -11.31692 -11.09725 -10.12439 -9.85645 -9.02187 -6.73744 0.29599 0.48232 0.76355 1.37251 1.43307 1.52229 1.60375 2.14207 2.46946 3.28810 3.85181 4.18616 4.52947 4.86403 5.03906 5.39344 5.94728 6.04235 6.33373 6.53155 7.38272 7.94253 Molecular weight = 217.97amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.010832 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.770551 B = 2584.366240 C = 3265.918075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.036 3.964 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.251 1.251 6 H -0.263 1.263 7 C -0.403 4.403 8 H 0.109 0.891 9 C 0.005 3.995 10 C 0.087 3.913 11 N -0.493 5.493 12 C 0.187 3.813 13 Cl -0.014 7.014 14 N -0.484 5.484 15 C 0.073 3.927 16 Cl -0.036 7.036 17 H 0.310 0.690 18 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 2.916 0.069 4.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.175 1.175 6 H -0.187 1.187 7 C -0.430 4.430 8 H 0.127 0.873 9 C -0.003 4.003 10 C -0.088 4.088 11 N -0.209 5.209 12 C -0.098 4.098 13 Cl 0.014 6.986 14 N -0.201 5.201 15 C -0.102 4.102 16 Cl -0.008 7.008 17 H 0.122 0.878 18 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.090 1.944 0.247 2.866 hybrid contribution 0.506 0.810 -0.357 1.019 sum 2.596 2.754 -0.110 3.787 Atomic orbital electron populations 1.69712 1.09441 1.33200 1.28242 1.27128 0.95651 1.05379 0.90448 0.84882 0.79175 0.74012 0.80157 1.17857 1.17464 1.18690 1.20170 0.98837 0.90192 1.33836 0.87310 1.19220 0.94701 0.93333 0.93092 1.23461 0.94699 0.94141 0.96522 1.67231 1.32145 0.98377 1.23107 1.21571 0.94679 0.87673 1.05926 1.98261 1.77316 1.31054 1.92010 1.66213 1.07389 1.34270 1.12234 1.21787 0.95485 0.89218 1.03717 1.98254 1.36938 1.98395 1.67258 0.87836 0.80703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -33.39 10.94 21.83 0.24 -33.15 13 2 C 0.04 1.45 5.20 85.25 0.44 1.89 13 3 Si 1.00 30.09 29.59 68.60 2.03 32.12 13 4 H -0.25 -7.41 7.11 99.48 0.71 -6.70 13 5 H -0.25 -7.44 7.11 99.48 0.71 -6.73 13 6 H -0.26 -7.56 7.11 99.48 0.71 -6.85 13 7 C -0.40 -18.02 8.61 23.45 0.20 -17.82 13 8 H 0.11 4.60 7.21 -2.91 -0.02 4.58 13 9 C 0.01 0.26 5.60 -21.08 -0.12 0.14 13 10 C 0.09 4.31 9.99 85.37 0.85 5.16 13 11 N -0.49 -24.88 10.37 -188.72 -1.96 -26.84 13 12 C 0.19 9.25 8.17 180.68 1.48 10.72 13 13 Cl -0.01 -0.56 29.26 -2.72 -0.08 -0.64 13 14 N -0.48 -24.39 10.37 -179.61 -1.86 -26.25 13 15 C 0.07 3.60 7.41 85.41 0.63 4.23 13 16 Cl -0.04 -1.51 27.93 -2.72 -0.08 -1.59 13 17 H 0.31 11.51 8.30 -92.71 -0.77 10.74 13 18 H 0.18 8.39 6.23 -2.91 -0.02 8.37 13 Total: -1.00 -51.71 206.51 3.10 -48.62 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.31 Total: 3.40 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 3.49 Total: 4.32 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.58 Total: -86.24 kcal Atomic # 14 Polarization: 30.09 SS G_CDS: 2.03 Total: 32.12 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.16 Total: -2.22 kcal Total: -51.71 3.10 -48.62 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368426.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.951 kcal (2) G-P(sol) polarization free energy of solvation -51.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds