Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46788 * 2 1 4 4 C 1.50696 * 109.47189 * 240.00269 * 2 1 3 5 5 H 1.08000 * 119.99934 * 239.99250 * 4 2 1 6 6 C 1.37876 * 120.00043 * 59.99823 * 4 2 1 7 7 N 1.31511 * 120.00143 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99711 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47229 * 60.00105 * 8 6 4 10 10 H 1.48499 * 109.46878 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47192 * 299.99780 * 8 6 4 12 12 N 1.46899 * 109.47225 * 119.99784 * 2 1 3 13 13 C 1.47908 * 110.99861 * 59.91174 * 12 2 1 14 14 C 1.54608 * 102.62327 * 149.11903 * 13 12 2 15 15 C 1.51574 * 102.83629 * 334.47050 * 14 13 12 16 16 C 1.37921 * 131.56225 * 196.29793 * 15 14 13 17 17 C 1.38299 * 120.08031 * 179.33390 * 16 15 14 18 18 C 1.38305 * 119.88642 * 359.97438 * 17 16 15 19 19 C 1.37914 * 120.26175 * 0.12329 * 18 17 16 20 20 C 1.38963 * 107.95309 * 15.91728 * 15 14 13 21 21 H 1.08995 * 109.47258 * 60.00347 * 1 2 3 22 22 H 1.09000 * 109.46788 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47241 * 299.99238 * 1 2 3 24 24 H 0.97000 * 119.99929 * 180.02562 * 7 6 4 25 25 H 1.08993 * 110.78194 * 267.40102 * 13 12 2 26 26 H 1.08996 * 110.78101 * 30.64941 * 13 12 2 27 27 H 1.08998 * 110.74006 * 216.13080 * 14 13 12 28 28 H 1.09001 * 110.73394 * 92.80741 * 14 13 12 29 29 H 1.07994 * 119.95804 * 359.35420 * 16 15 14 30 30 H 1.07999 * 120.05701 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.87281 * 179.84943 * 18 17 16 32 32 H 1.08003 * 119.89998 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8282 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2204 11 1 3.8076 -1.1187 -4.0077 12 7 2.0197 -0.6924 1.1994 13 6 1.5437 -2.0924 1.2347 14 6 2.6889 -2.8201 1.9758 15 6 3.8882 -1.9379 1.6914 16 6 5.2427 -2.1688 1.8103 17 6 6.1472 -1.1810 1.4653 18 6 5.6911 0.0390 1.0002 19 6 4.3377 0.2757 0.8813 20 6 3.4196 -0.7136 1.2304 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 0.6110 -2.1698 1.7934 26 1 1.4217 -2.4849 0.2252 27 1 2.8393 -3.8194 1.5675 28 1 2.4883 -2.8655 3.0463 29 1 5.5975 -3.1221 2.1729 30 1 7.2077 -1.3621 1.5590 31 1 6.3976 0.8110 0.7332 32 1 3.9880 1.2307 0.5178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246567.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = 33.637716 kcal Electronic energy + Delta-G solvation = -14754.826837 eV Core-core repulsion = 12487.106758 eV Total energy + Delta-G solvation = -2267.720079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95178 -36.28743 -33.56696 -31.61692 -29.85335 -28.18783 -27.13387 -25.18948 -22.27656 -21.83703 -20.53283 -19.23027 -16.60534 -15.69819 -15.21684 -14.97823 -14.39723 -14.31040 -13.36181 -12.97396 -12.64720 -12.16799 -11.94755 -11.66331 -11.41258 -11.05876 -10.99088 -10.79704 -10.70679 -10.43614 -10.21530 -10.08424 -9.95586 -9.54675 -8.69560 -8.45684 -8.13419 -6.82244 -6.05855 -4.18815 2.05289 2.15935 3.26524 3.31003 3.35066 4.34107 4.40060 4.89221 5.19204 5.24543 5.40209 5.60247 5.66067 5.87329 5.95039 6.07212 6.26314 6.40206 6.48747 6.57904 6.70188 6.73799 6.89091 7.00399 7.04958 7.15872 7.20911 7.39464 7.58396 7.68118 7.85797 7.99155 8.24146 8.28835 8.87286 9.48247 10.94311 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.011908 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.115571 B = 2350.701903 C = 2728.617491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.203 3.797 3 H 0.045 0.955 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.071 3.929 7 N -0.886 5.886 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.484 5.484 13 C 0.051 3.949 14 C -0.081 4.081 15 C -0.163 4.163 16 C -0.086 4.086 17 C -0.171 4.171 18 C -0.098 4.098 19 C -0.129 4.129 20 C 0.152 3.848 21 H 0.089 0.911 22 H 0.029 0.971 23 H 0.016 0.984 24 H 0.263 0.737 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -4.193 6.350 8.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.099 3.901 3 H 0.062 0.938 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.132 4.132 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.196 5.196 13 C -0.076 4.076 14 C -0.119 4.119 15 C -0.166 4.166 16 C -0.105 4.105 17 C -0.190 4.190 18 C -0.117 4.117 19 C -0.150 4.150 20 C 0.052 3.948 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.134 -3.770 6.613 8.662 hybrid contribution 0.577 -0.745 -1.572 1.833 sum 4.711 -4.514 5.041 8.245 Atomic orbital electron populations 1.21837 0.97218 0.99520 1.00724 1.19521 0.92697 0.94566 0.83358 0.93764 1.21573 1.31804 1.13170 0.91165 0.92421 1.24866 0.94659 0.94811 0.98883 1.69859 1.36191 1.22614 1.23775 0.86675 0.79444 0.79818 0.82291 1.20247 1.21161 1.20135 1.60852 1.04251 1.14766 1.39769 1.23113 0.96846 0.86742 1.00867 1.21258 0.92519 0.97884 1.00222 1.20518 0.94059 0.95917 1.06131 1.20180 0.91514 0.98529 1.00291 1.20713 0.98400 0.94471 1.05418 1.20749 0.94804 0.96920 0.99240 1.20442 0.91864 0.99642 1.03089 1.19592 0.89702 0.93037 0.92509 0.89251 0.95190 0.96490 0.92699 0.90616 0.90463 0.91267 0.90895 0.87345 0.87041 0.86766 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.87 37.16 0.33 -2.88 16 2 C 0.20 5.05 2.16 -68.87 -0.15 4.90 16 3 H 0.04 1.21 7.32 -51.93 -0.38 0.83 16 4 C -0.54 -14.36 6.70 -34.44 -0.23 -14.59 16 5 H 0.06 1.59 6.68 -52.49 -0.35 1.24 16 6 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.48 -10.77 5.08 -162.80 -0.83 -11.60 16 13 C 0.05 0.99 5.22 -2.42 -0.01 0.98 16 14 C -0.08 -1.39 7.04 -26.61 -0.19 -1.58 16 15 C -0.16 -3.16 6.23 -104.04 -0.65 -3.80 16 16 C -0.09 -1.49 10.03 -39.68 -0.40 -1.88 16 17 C -0.17 -2.83 10.06 -39.53 -0.40 -3.23 16 18 C -0.10 -1.75 10.02 -39.68 -0.40 -2.15 16 19 C -0.13 -2.69 9.41 -39.27 -0.37 -3.06 16 20 C 0.15 3.30 4.85 -83.40 -0.40 2.89 16 21 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 22 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 26 H 0.08 1.66 6.26 -51.93 -0.33 1.33 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 2.51 7.38 -52.48 -0.39 2.12 16 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -28.10 259.04 -8.50 -36.60 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.22 Total: 1.49 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.96 Total: -22.60 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.20 Total: -35.58 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.10 -8.50 -36.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246567.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.236 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds