Wall clock time and date at job start Mon Mar 30 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46788 * 2 1 4 4 C 1.50696 * 109.47189 * 240.00269 * 2 1 3 5 5 H 1.08000 * 119.99934 * 239.99250 * 4 2 1 6 6 C 1.37876 * 120.00043 * 59.99823 * 4 2 1 7 7 N 1.31511 * 120.00143 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99711 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47229 * 60.00105 * 8 6 4 10 10 H 1.48499 * 109.46878 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47192 * 299.99780 * 8 6 4 12 12 N 1.46899 * 109.47225 * 119.99784 * 2 1 3 13 13 C 1.47908 * 110.99861 * 59.91174 * 12 2 1 14 14 C 1.54608 * 102.62327 * 149.11903 * 13 12 2 15 15 C 1.51574 * 102.83629 * 334.47050 * 14 13 12 16 16 C 1.37921 * 131.56225 * 196.29793 * 15 14 13 17 17 C 1.38299 * 120.08031 * 179.33390 * 16 15 14 18 18 C 1.38305 * 119.88642 * 359.97438 * 17 16 15 19 19 C 1.37914 * 120.26175 * 0.12329 * 18 17 16 20 20 C 1.38963 * 107.95309 * 15.91728 * 15 14 13 21 21 H 1.08995 * 109.47258 * 60.00347 * 1 2 3 22 22 H 1.09000 * 109.46788 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47241 * 299.99238 * 1 2 3 24 24 H 0.97000 * 119.99929 * 180.02562 * 7 6 4 25 25 H 1.08993 * 110.78194 * 267.40102 * 13 12 2 26 26 H 1.08996 * 110.78101 * 30.64941 * 13 12 2 27 27 H 1.08998 * 110.74006 * 216.13080 * 14 13 12 28 28 H 1.09001 * 110.73394 * 92.80741 * 14 13 12 29 29 H 1.07994 * 119.95804 * 359.35420 * 16 15 14 30 30 H 1.07999 * 120.05701 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.87281 * 179.84943 * 18 17 16 32 32 H 1.08003 * 119.89998 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8282 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2204 11 1 3.8076 -1.1187 -4.0077 12 7 2.0197 -0.6924 1.1994 13 6 1.5437 -2.0924 1.2347 14 6 2.6889 -2.8201 1.9758 15 6 3.8882 -1.9379 1.6914 16 6 5.2427 -2.1688 1.8103 17 6 6.1472 -1.1810 1.4653 18 6 5.6911 0.0390 1.0002 19 6 4.3377 0.2757 0.8813 20 6 3.4196 -0.7136 1.2304 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 0.6110 -2.1698 1.7934 26 1 1.4217 -2.4849 0.2252 27 1 2.8393 -3.8194 1.5675 28 1 2.4883 -2.8655 3.0463 29 1 5.5975 -3.1221 2.1729 30 1 7.2077 -1.3621 1.5590 31 1 6.3976 0.8110 0.7332 32 1 3.9880 1.2307 0.5178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246567.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:56 Heat of formation + Delta-G solvation = 17.703722 kcal Electronic energy + Delta-G solvation = -14755.517787 eV Core-core repulsion = 12487.106758 eV Total energy + Delta-G solvation = -2268.411029 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.48246 -37.85380 -35.39275 -33.34245 -31.51048 -29.64270 -28.76961 -27.26126 -23.77217 -23.50731 -21.95575 -20.98516 -18.50642 -17.44757 -16.79612 -16.47662 -16.13213 -15.87885 -14.97880 -14.74801 -14.19598 -13.63814 -13.55283 -13.41554 -13.06963 -12.91429 -12.70377 -12.54840 -12.23223 -12.08852 -12.04243 -11.99167 -11.51980 -11.39971 -10.55143 -10.40342 -9.55672 -8.49227 -8.05160 -6.31179 0.61938 0.69853 1.35984 1.37069 1.44581 2.36791 2.91434 3.10964 3.37866 3.81655 3.93683 4.29643 4.30140 4.49945 4.57413 4.66798 4.75663 4.81515 4.94512 4.98485 5.05113 5.12182 5.17806 5.25780 5.43967 5.55778 5.65808 5.71514 5.76774 5.93843 6.06978 6.12053 6.34143 6.59640 6.83870 7.38138 8.86917 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.011908 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.115571 B = 2350.701903 C = 2728.617491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H 0.006 0.994 4 C -0.539 4.539 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.492 5.492 13 C 0.047 3.953 14 C -0.071 4.071 15 C -0.173 4.173 16 C -0.087 4.087 17 C -0.160 4.160 18 C -0.103 4.103 19 C -0.159 4.159 20 C 0.111 3.889 21 H 0.065 0.935 22 H 0.037 0.963 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -6.207 7.047 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.024 0.976 4 C -0.578 4.578 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.773 3.227 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.206 5.206 13 C -0.079 4.079 14 C -0.109 4.109 15 C -0.176 4.176 16 C -0.105 4.105 17 C -0.179 4.179 18 C -0.122 4.122 19 C -0.180 4.180 20 C 0.011 3.989 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.777 -5.792 7.324 10.981 hybrid contribution 0.167 -0.105 -1.730 1.742 sum 5.945 -5.897 5.594 10.070 Atomic orbital electron populations 1.21663 0.96596 0.99769 1.00133 1.19231 0.93054 0.92829 0.84441 0.97597 1.21658 1.31362 1.12637 0.92098 0.93553 1.25566 0.95007 0.95529 1.01473 1.69975 1.37113 1.23679 1.24267 0.85773 0.78588 0.79061 0.79273 1.19518 1.20564 1.20333 1.60851 1.05292 1.16123 1.38284 1.23180 0.98815 0.85679 1.00236 1.21274 0.90255 0.98019 1.01311 1.20919 0.95755 0.95195 1.05719 1.20658 0.90558 1.00165 0.99110 1.21220 1.00457 0.93259 1.02947 1.21088 0.93780 0.98532 0.98751 1.20550 0.93618 0.98988 1.04819 1.19867 0.89465 0.94691 0.94879 0.91597 0.94367 0.95204 0.92693 0.88976 0.92903 0.89092 0.88568 0.83665 0.83064 0.84326 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.87 71.98 0.64 -5.39 16 2 C 0.21 10.84 2.16 44.17 0.10 10.94 16 3 H 0.01 0.36 7.32 -2.39 -0.02 0.34 16 4 C -0.54 -29.46 6.70 25.60 0.17 -29.29 16 5 H 0.05 2.60 6.68 -2.91 -0.02 2.58 16 6 C 0.02 1.34 5.30 84.66 0.45 1.79 16 7 N -0.91 -51.97 11.32 21.45 0.24 -51.73 16 8 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 N -0.49 -22.26 5.08 -668.99 -3.40 -25.66 16 13 C 0.05 1.81 5.22 86.66 0.45 2.26 16 14 C -0.07 -2.26 7.04 30.67 0.22 -2.04 16 15 C -0.17 -6.34 6.23 -19.49 -0.12 -6.46 16 16 C -0.09 -2.65 10.03 22.21 0.22 -2.43 16 17 C -0.16 -4.71 10.06 22.30 0.22 -4.49 16 18 C -0.10 -3.52 10.02 22.21 0.22 -3.30 16 19 C -0.16 -6.76 9.41 22.47 0.21 -6.54 16 20 C 0.11 4.81 4.85 38.28 0.19 5.00 16 21 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 22 H 0.04 1.74 7.14 -2.39 -0.02 1.72 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 25 H 0.09 3.15 8.13 -2.39 -0.02 3.14 16 26 H 0.05 2.27 6.26 -2.39 -0.01 2.26 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.09 4.26 7.38 -2.91 -0.02 4.24 16 Total: -1.00 -61.72 259.04 2.93 -58.79 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.10 Total: 12.71 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.97 Total: -39.95 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -3.16 Total: -77.39 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.72 2.93 -58.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246567.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.492 kcal (2) G-P(sol) polarization free energy of solvation -61.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds