Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47038 * 2 1 4 4 C 1.50701 * 109.47235 * 120.00409 * 2 1 3 5 5 H 1.07995 * 120.00253 * 119.99913 * 4 2 1 6 6 C 1.37881 * 119.99553 * 299.99668 * 4 2 1 7 7 N 1.31517 * 119.99874 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00168 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46960 * 89.99929 * 8 6 4 10 10 H 1.48495 * 109.47139 * 209.99674 * 8 6 4 11 11 H 1.48495 * 109.47083 * 330.00315 * 8 6 4 12 12 N 1.46906 * 109.46874 * 240.00193 * 2 1 3 13 13 C 1.48910 * 110.99964 * 177.69733 * 12 2 1 14 14 C 1.51550 * 104.18668 * 277.54173 * 13 12 2 15 15 C 1.37984 * 132.18745 * 156.65011 * 14 13 12 16 16 C 1.38278 * 119.94468 * 180.41347 * 15 14 13 17 17 C 1.38262 * 120.03332 * 0.26415 * 16 15 14 18 18 C 1.38281 * 120.04097 * 359.97438 * 17 16 15 19 19 C 1.37990 * 119.93932 * 0.02562 * 18 17 16 20 20 C 1.48908 * 111.00021 * 65.16261 * 12 2 1 21 21 H 1.08996 * 109.47427 * 174.05266 * 1 2 3 22 22 H 1.09005 * 109.46701 * 294.05092 * 1 2 3 23 23 H 1.08997 * 109.47042 * 54.04749 * 1 2 3 24 24 H 0.96998 * 119.99978 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.50905 * 36.41444 * 13 12 2 26 26 H 1.08996 * 110.50614 * 158.98200 * 13 12 2 27 27 H 1.08002 * 120.02545 * 0.69202 * 15 14 13 28 28 H 1.07994 * 119.98596 * 180.28272 * 16 15 14 29 29 H 1.08007 * 119.97950 * 180.02562 * 17 16 15 30 30 H 1.08001 * 120.03657 * 180.02562 * 18 17 16 31 31 H 1.08997 * 110.50732 * 323.57886 * 20 12 2 32 32 H 1.08998 * 110.62245 * 200.93628 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9760 1.9950 3.9068 11 1 0.8470 2.1764 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 3.5072 -0.6642 -1.2622 14 6 3.8281 0.6923 -1.8569 15 6 4.9539 1.4879 -1.7961 16 6 4.9704 2.7110 -2.4409 17 6 3.8579 3.1390 -3.1414 18 6 2.7277 2.3443 -3.1985 19 6 2.7110 1.1236 -2.5551 20 6 1.6470 0.0512 -2.4346 21 1 -0.3634 -1.0221 -0.1065 22 1 -0.3633 0.4189 0.9385 23 1 -0.3633 0.6033 -0.8319 24 1 1.9033 -0.5281 4.4375 25 1 3.9333 -0.7565 -0.2632 26 1 3.8773 -1.4595 -1.9092 27 1 5.8231 1.1535 -1.2491 28 1 5.8528 3.3321 -2.3976 29 1 3.8719 4.0943 -3.6451 30 1 1.8589 2.6785 -3.7461 31 1 0.6606 0.5021 -2.3258 32 1 1.6707 -0.6085 -3.3019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050911298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 29.204839 kcal Electronic energy + Delta-G solvation = -14608.030663 eV Core-core repulsion = 12340.118360 eV Total energy + Delta-G solvation = -2267.912303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45449 -38.12929 -35.16488 -33.04672 -32.30512 -29.97494 -28.66275 -26.71617 -24.95975 -22.72703 -21.92343 -21.18574 -18.84340 -17.38070 -17.25497 -16.36947 -16.02534 -15.71212 -15.21388 -14.78252 -14.67869 -14.14695 -13.97006 -13.81795 -13.45653 -12.86952 -12.67451 -12.55696 -12.26063 -12.19596 -12.06387 -11.68908 -11.48446 -11.12066 -10.76706 -9.73904 -9.48230 -9.43393 -8.32010 -6.34428 0.42753 0.48863 1.25308 1.31446 1.41009 2.27946 2.84830 3.01282 3.19104 3.55217 3.87284 4.13970 4.21885 4.34926 4.45265 4.58065 4.60422 4.61922 4.71672 4.76414 4.82766 4.93042 5.03199 5.14204 5.18875 5.32272 5.50374 5.58403 5.59811 5.69736 5.92704 6.06565 6.12394 6.54309 6.70224 7.29494 8.84470 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032693 B = 0.010031 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.248986 B = 2790.787996 C = 2845.664998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.178 3.822 3 H -0.012 1.012 4 C -0.507 4.507 5 H 0.041 0.959 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.260 1.260 10 H -0.297 1.297 11 H -0.258 1.258 12 N -0.496 5.496 13 C 0.076 3.924 14 C -0.138 4.138 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.110 4.110 19 C -0.143 4.143 20 C 0.066 3.934 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.266 0.734 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 8.443 -14.397 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.069 3.931 3 H 0.005 0.995 4 C -0.545 4.545 5 H 0.059 0.941 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.774 3.226 9 H -0.186 1.186 10 H -0.225 1.225 11 H -0.183 1.183 12 N -0.217 5.217 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.128 4.128 19 C -0.145 4.145 20 C -0.061 4.061 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.106 0.894 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.853 7.833 -14.153 16.199 hybrid contribution 0.130 1.019 0.857 1.338 sum 0.983 8.852 -13.296 16.004 Atomic orbital electron populations 1.22092 0.96544 1.01861 0.99504 1.19612 0.92905 0.91800 0.88768 0.99492 1.21138 1.31018 1.12326 0.90002 0.94060 1.25727 0.97385 0.99764 0.95381 1.70023 1.47668 1.42326 0.98514 0.85889 0.79639 0.80074 0.77031 1.18605 1.22463 1.18283 1.65913 1.07227 1.46711 1.01825 1.21949 0.89542 0.93315 1.00447 1.21566 0.95598 0.97746 0.99082 1.20777 0.97619 0.95060 1.00429 1.21424 0.99821 0.95606 0.97348 1.21466 0.92662 1.00575 0.99584 1.20813 0.99675 0.92661 0.99652 1.21640 0.97216 0.96837 0.98782 1.22255 0.97113 0.92421 0.94360 0.91994 0.94605 0.91926 0.92464 0.91727 0.88273 0.85731 0.83264 0.82774 0.83946 0.89433 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 8.53 71.98 0.61 -5.50 16 2 C 0.18 8.57 1.39 44.17 0.06 8.63 16 3 H -0.01 -0.64 6.38 -2.39 -0.02 -0.65 16 4 C -0.51 -29.45 8.21 25.60 0.21 -29.24 16 5 H 0.04 2.67 7.39 -2.91 -0.02 2.64 16 6 C 0.01 0.88 5.45 84.66 0.46 1.34 16 7 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 8 Si 0.95 45.97 24.42 68.60 1.67 47.64 16 9 H -0.26 -11.85 6.82 99.48 0.68 -11.17 16 10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.26 -12.02 6.53 99.48 0.65 -11.37 16 12 N -0.50 -20.91 5.47 -870.05 -4.76 -25.66 16 13 C 0.08 3.05 6.37 85.44 0.54 3.59 16 14 C -0.14 -5.01 5.80 -19.56 -0.11 -5.12 16 15 C -0.12 -3.81 10.04 22.22 0.22 -3.59 16 16 C -0.12 -3.18 10.05 22.28 0.22 -2.96 16 17 C -0.13 -2.98 10.05 22.29 0.22 -2.76 16 18 C -0.11 -2.95 10.04 22.22 0.22 -2.73 16 19 C -0.14 -4.74 5.74 -19.56 -0.11 -4.85 16 20 C 0.07 2.20 6.46 85.44 0.55 2.75 16 21 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 22 H 0.04 1.59 3.21 -2.38 -0.01 1.58 16 23 H 0.06 2.23 6.46 -2.39 -0.02 2.21 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.06 3.03 6.44 -2.39 -0.02 3.02 16 26 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.09 2.71 6.02 -2.39 -0.01 2.70 16 32 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -67.71 253.30 1.35 -66.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.02 Total: 11.42 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.11 Total: -40.45 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -4.46 Total: -84.97 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.67 Total: 47.64 kcal Total: -67.71 1.35 -66.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050911298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.560 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds