Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86793 * 120.00072 * 2 1 4 4 H 1.48497 * 109.47186 * 274.72929 * 3 2 1 5 5 H 1.48498 * 109.47169 * 34.73082 * 3 2 1 6 6 H 1.48506 * 109.47068 * 154.72763 * 3 2 1 7 7 C 1.38869 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 199.64544 * 7 2 1 9 9 N 1.37094 * 120.00298 * 19.65017 * 7 2 1 10 10 C 1.34646 * 119.63793 * 41.26090 * 9 7 2 11 11 O 1.21283 * 119.61969 * 2.46022 * 10 9 7 12 12 C 1.50737 * 120.76999 * 182.43257 * 10 9 7 13 13 N 1.47059 * 109.02361 * 330.97173 * 12 10 9 14 14 C 1.40017 * 117.88482 * 41.96103 * 13 12 10 15 15 C 1.38369 * 121.10326 * 150.50778 * 14 13 12 16 16 C 1.38344 * 119.73266 * 180.26521 * 15 14 13 17 17 C 1.38357 * 120.21501 * 0.05446 * 16 15 14 18 18 C 1.38217 * 120.38761 * 359.93829 * 17 16 15 19 19 C 1.38693 * 119.84448 * 359.94710 * 18 17 16 20 20 H 0.97001 * 119.99508 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.54708 * 211.11512 * 12 10 9 22 22 H 1.08991 * 109.54792 * 90.83867 * 12 10 9 23 23 H 0.96998 * 121.05923 * 221.97556 * 13 12 10 24 24 H 1.08002 * 120.13641 * 359.97438 * 15 14 13 25 25 H 1.08001 * 119.89313 * 180.02562 * 16 15 14 26 26 H 1.07997 * 119.80853 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.07942 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.3959 2.1041 -1.3953 5 1 1.4995 2.6217 0.7976 6 1 3.5924 1.4133 0.5977 7 6 2.0087 -1.2027 0.0005 8 1 3.0416 -1.2298 0.3150 9 7 1.3830 -2.3556 -0.3982 10 6 0.5643 -2.3334 -1.4669 11 8 0.4234 -1.3042 -2.0929 12 6 -0.1789 -3.5731 -1.8948 13 7 0.6044 -4.7575 -1.5124 14 6 1.2149 -4.7601 -0.2523 15 6 1.4320 -5.9416 0.4343 16 6 2.0326 -5.9107 1.6802 17 6 2.4143 -4.7041 2.2395 18 6 2.2008 -3.5197 1.5596 19 6 1.6015 -3.5401 0.3090 20 1 -0.4849 0.8401 -0.0004 21 1 -0.3167 -3.5607 -2.9760 22 1 -1.1507 -3.6040 -1.4023 23 1 0.6955 -5.5129 -2.1141 24 1 1.1296 -6.8837 0.0015 25 1 2.2038 -6.8313 2.2183 26 1 2.8822 -4.6875 3.2126 27 1 2.5003 -2.5807 2.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057363610.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = 14.642967 kcal Electronic energy + Delta-G solvation = -14594.048862 eV Core-core repulsion = 12124.246104 eV Total energy + Delta-G solvation = -2469.802758 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89411 -37.43485 -34.81819 -34.28681 -31.87339 -29.45989 -28.52972 -26.33123 -24.25326 -22.11293 -21.52122 -18.73407 -17.31197 -16.95668 -16.36942 -15.43328 -14.44899 -14.18224 -14.03331 -13.70139 -13.25561 -12.90331 -12.68200 -12.18759 -11.78242 -11.50322 -11.07527 -10.93110 -10.78778 -10.39169 -10.23003 -9.53873 -9.37245 -8.72588 -8.23989 -7.33219 -6.56890 -6.23689 -4.05698 2.13807 2.22046 3.24051 3.32121 3.33451 3.77364 4.17076 4.21606 4.69995 4.74379 5.19768 5.46921 5.53164 5.70522 5.92791 6.00782 6.12514 6.23503 6.42399 6.74302 6.93218 7.10546 7.32960 7.46411 7.50742 7.79062 8.11474 8.31784 8.80103 8.87566 9.42043 9.91916 10.76856 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.012134 C = 0.009502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.377394 B = 2306.963941 C = 2946.158646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.366 4.366 8 H 0.091 0.909 9 N -0.382 5.382 10 C 0.470 3.530 11 O -0.512 6.512 12 C 0.120 3.880 13 N -0.760 5.760 14 C 0.131 3.869 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.130 4.130 18 C -0.128 4.128 19 C 0.135 3.865 20 H 0.269 0.731 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.398 0.602 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -8.907 0.950 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.138 4.138 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.492 4.492 8 H 0.108 0.892 9 N -0.090 5.090 10 C 0.258 3.742 11 O -0.387 6.387 12 C -0.008 4.008 13 N -0.399 5.399 14 C 0.030 3.970 15 C -0.173 4.173 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.150 4.150 19 C 0.033 3.967 20 H 0.079 0.921 21 H 0.112 0.888 22 H 0.086 0.914 23 H 0.233 0.767 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.259 -7.921 0.512 8.037 hybrid contribution 0.242 0.488 -0.190 0.577 sum 1.501 -7.433 0.322 7.590 Atomic orbital electron populations 1.69888 1.06772 1.28068 1.41496 1.25258 0.94910 0.99880 0.93719 0.86047 0.79446 0.81399 0.78397 1.20120 1.20991 1.19394 1.19149 0.95805 0.83947 1.50262 0.89168 1.41089 1.39437 1.06204 1.22309 1.20482 0.83370 0.89294 0.81040 1.90559 1.62513 1.32537 1.53042 1.21564 0.94668 0.83777 1.00778 1.44192 1.59326 1.20239 1.16096 1.17502 0.99464 0.92641 0.87396 1.20287 1.05618 0.95632 0.95717 1.20569 1.03217 0.97235 0.95879 1.20723 1.02540 0.92164 0.99590 1.20696 1.02687 0.98598 0.93028 1.18345 0.99032 0.86182 0.93141 0.92078 0.88753 0.91367 0.76739 0.86962 0.87284 0.87125 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.54 11.62 55.49 0.64 -23.89 15 2 C 0.07 2.08 4.30 -17.49 -0.08 2.01 15 3 Si 0.92 21.69 29.59 -169.99 -5.03 16.66 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.37 -10.21 7.87 -14.97 -0.12 -10.33 15 8 H 0.09 2.42 7.64 -52.48 -0.40 2.02 15 9 N -0.38 -10.14 2.75 -58.90 -0.16 -10.31 15 10 C 0.47 12.33 6.87 -11.03 -0.08 12.26 15 11 O -0.51 -15.17 14.64 5.56 0.08 -15.09 15 12 C 0.12 2.40 7.25 -4.87 -0.04 2.37 15 13 N -0.76 -13.51 5.89 -59.22 -0.35 -13.86 15 14 C 0.13 2.59 6.47 -83.51 -0.54 2.05 15 15 C -0.15 -2.51 10.00 -39.49 -0.39 -2.90 15 16 C -0.15 -2.39 10.04 -39.50 -0.40 -2.79 15 17 C -0.13 -2.26 10.03 -39.55 -0.40 -2.66 15 18 C -0.13 -2.70 9.28 -39.42 -0.37 -3.06 15 19 C 0.14 3.13 6.39 -83.55 -0.53 2.60 15 20 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.09 1.62 8.14 -51.93 -0.42 1.19 15 22 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 23 H 0.40 5.59 8.96 -40.82 -0.37 5.23 15 24 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.11 1.42 8.06 -52.49 -0.42 0.99 15 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.13 2.82 7.01 -52.49 -0.37 2.45 15 LS Contribution 236.71 15.07 3.57 3.57 Total: -1.00 -32.47 236.71 -6.56 -39.03 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -2.38 Total: 4.34 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.93 Total: -0.45 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.13 Total: -48.05 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.47 -6.56 -39.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057363610.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.674 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds