Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48501 * 109.46764 * 275.24066 * 3 2 1 5 5 H 1.48499 * 109.47334 * 35.23606 * 3 2 1 6 6 H 1.48496 * 109.47076 * 155.24166 * 3 2 1 7 7 C 1.38908 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00711 * 336.24105 * 7 2 1 9 9 N 1.37312 * 119.99538 * 156.23190 * 7 2 1 10 10 C 1.36542 * 126.39652 * 140.52242 * 9 7 2 11 11 C 1.50695 * 124.98059 * 0.02562 * 10 9 7 12 12 O 1.42907 * 109.46861 * 273.55036 * 11 10 9 13 13 N 1.30092 * 110.03858 * 180.02562 * 10 9 7 14 14 C 1.35898 * 109.73838 * 359.97438 * 13 10 9 15 15 C 1.39675 * 133.50672 * 180.02562 * 14 13 10 16 16 C 1.37712 * 119.78155 * 179.97438 * 15 14 13 17 17 C 1.38725 * 120.51321 * 0.02562 * 16 15 14 18 18 C 1.37947 * 120.43871 * 0.02562 * 17 16 15 19 19 C 1.38395 * 126.40264 * 320.52074 * 9 7 2 20 20 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47360 * 33.54463 * 11 10 9 22 22 H 1.08996 * 109.47121 * 153.54992 * 11 10 9 23 23 H 0.96703 * 113.99646 * 184.66048 * 12 11 10 24 24 H 1.08010 * 120.10798 * 359.95782 * 15 14 13 25 25 H 1.07999 * 119.73997 * 179.72309 * 16 15 14 26 26 H 1.08000 * 119.77642 * 179.97438 * 17 16 15 27 27 H 1.08002 * 120.08156 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3846 2.1103 -1.3943 5 1 1.5051 2.6182 0.8077 6 1 3.5964 1.4107 0.5863 7 6 2.0083 -1.2030 0.0005 8 1 1.5371 -2.0986 0.3777 9 7 3.2941 -1.2536 -0.4787 10 6 4.3279 -1.9726 0.0492 11 6 4.2346 -2.8508 1.2703 12 8 4.4549 -2.0626 2.4418 13 7 5.4051 -1.7884 -0.6564 14 6 5.1406 -0.9408 -1.6852 15 6 5.9153 -0.4157 -2.7221 16 6 5.3445 0.4423 -3.6355 17 6 4.0054 0.7901 -3.5339 18 6 3.2265 0.2813 -2.5153 19 6 3.7844 -0.5854 -1.5871 20 1 -0.4850 0.8400 -0.0004 21 1 3.2439 -3.3031 1.3177 22 1 4.9896 -3.6348 1.2125 23 1 4.4801 -2.5750 3.2615 24 1 6.9587 -0.6816 -2.8070 25 1 5.9452 0.8514 -4.4343 26 1 3.5700 1.4644 -4.2565 27 1 2.1847 0.5562 -2.4414 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058004173.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = 26.841254 kcal Electronic energy + Delta-G solvation = -14510.888487 eV Core-core repulsion = 12041.614686 eV Total energy + Delta-G solvation = -2469.273801 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12843 -36.81511 -35.83381 -34.12422 -31.87310 -29.54921 -29.21233 -26.01628 -25.21709 -21.48122 -21.23142 -19.41251 -18.14768 -17.08923 -16.48624 -15.72908 -14.86508 -14.50365 -14.05208 -13.85612 -13.27428 -13.18495 -12.90450 -12.67898 -11.56967 -11.32589 -11.29832 -11.17817 -10.75271 -10.34140 -10.18460 -9.88761 -9.65336 -9.02616 -8.81252 -7.47484 -7.25283 -6.94938 -4.59579 1.76277 2.42326 2.98567 3.11156 3.26930 3.57795 3.91800 4.11726 4.47990 4.76603 4.87775 5.35537 5.58408 5.67857 5.74165 5.80402 5.95783 6.25655 6.37220 6.43130 6.59093 6.89545 7.17262 7.26253 7.45933 7.53974 7.78436 7.91681 8.03225 8.53869 8.95123 9.06383 10.10886 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.018587 C = 0.011401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.294079 B = 1506.070267 C = 2455.326633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.088 3.912 3 Si 0.867 3.133 4 H -0.245 1.245 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.356 4.356 8 H 0.121 0.879 9 N -0.291 5.291 10 C 0.215 3.785 11 C 0.175 3.825 12 O -0.561 6.561 13 N -0.509 5.509 14 C 0.035 3.965 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.087 4.087 19 C 0.009 3.991 20 H 0.286 0.714 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.376 0.624 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -0.800 -1.109 4.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.127 4.127 3 Si 0.691 3.309 4 H -0.170 1.170 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.484 4.484 8 H 0.138 0.862 9 N 0.038 4.962 10 C -0.046 4.046 11 C 0.096 3.904 12 O -0.365 6.365 13 N -0.232 5.232 14 C -0.091 4.091 15 C -0.097 4.097 16 C -0.163 4.163 17 C -0.160 4.160 18 C -0.108 4.108 19 C -0.105 4.105 20 H 0.097 0.903 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.222 0.778 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.154 -0.634 -1.231 5.337 hybrid contribution -0.718 0.746 0.389 1.106 sum 4.436 0.112 -0.841 4.516 Atomic orbital electron populations 1.69760 1.06581 1.29722 1.39188 1.25337 0.95149 0.99415 0.92775 0.87040 0.81405 0.82042 0.80444 1.16983 1.20577 1.18051 1.19204 0.85326 0.98527 1.45298 0.86151 1.41444 1.08711 1.30151 1.15940 1.22809 0.82906 1.01623 0.97273 1.20001 1.00226 0.89555 0.80612 1.86622 1.95843 1.37856 1.16136 1.70160 1.25365 1.20235 1.07484 1.18889 0.92057 1.00358 0.97749 1.20000 0.98417 0.98028 0.93269 1.20595 0.95157 1.00725 0.99857 1.20579 0.94229 1.02462 0.98765 1.20101 0.99902 0.96816 0.93942 1.18967 0.95714 1.03259 0.92608 0.90337 0.91725 0.91486 0.77804 0.86646 0.86641 0.86640 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.96 13.95 55.49 0.77 -21.19 15 2 C 0.09 2.33 4.91 -17.50 -0.09 2.25 15 3 Si 0.87 21.21 24.52 -169.99 -4.17 17.04 15 4 H -0.25 -5.65 5.50 56.52 0.31 -5.34 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.26 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.36 -9.58 9.83 -14.85 -0.15 -9.73 15 8 H 0.12 3.26 7.73 -52.49 -0.41 2.86 15 9 N -0.29 -7.62 2.44 -56.64 -0.14 -7.76 15 10 C 0.22 5.24 7.46 -154.37 -1.15 4.09 15 11 C 0.18 3.34 7.27 36.00 0.26 3.60 15 12 O -0.56 -10.51 13.64 -35.23 -0.48 -10.99 15 13 N -0.51 -12.65 11.27 -8.10 -0.09 -12.74 15 14 C 0.03 0.84 7.23 -84.66 -0.61 0.23 15 15 C -0.08 -1.58 10.10 -39.24 -0.40 -1.98 15 16 C -0.14 -2.60 10.02 -39.59 -0.40 -3.00 15 17 C -0.14 -2.73 10.03 -39.51 -0.40 -3.12 15 18 C -0.09 -2.03 6.90 -39.52 -0.27 -2.30 15 19 C 0.01 0.24 5.28 -83.86 -0.44 -0.21 15 20 H 0.29 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.06 1.15 7.62 -51.93 -0.40 0.75 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.38 4.44 9.12 45.56 0.42 4.86 15 24 H 0.12 2.05 8.06 -52.48 -0.42 1.63 15 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.12 1.87 8.06 -52.49 -0.42 1.45 15 27 H 0.12 2.78 5.81 -52.49 -0.30 2.48 15 LS Contribution 235.46 15.07 3.55 3.55 Total: -1.00 -31.89 235.46 -5.80 -37.69 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.61 Total: 4.56 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.64 Total: -10.17 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.54 Total: -41.68 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.48 Total: -10.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.17 Total: 17.04 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.89 -5.80 -37.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058004173.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.528 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds