Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48501 * 109.46764 * 275.24066 * 3 2 1 5 5 H 1.48499 * 109.47334 * 35.23606 * 3 2 1 6 6 H 1.48496 * 109.47076 * 155.24166 * 3 2 1 7 7 C 1.38908 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00711 * 336.24105 * 7 2 1 9 9 N 1.37312 * 119.99538 * 156.23190 * 7 2 1 10 10 C 1.36542 * 126.39652 * 140.52242 * 9 7 2 11 11 C 1.50695 * 124.98059 * 0.02562 * 10 9 7 12 12 O 1.42907 * 109.46861 * 273.55036 * 11 10 9 13 13 N 1.30092 * 110.03858 * 180.02562 * 10 9 7 14 14 C 1.35898 * 109.73838 * 359.97438 * 13 10 9 15 15 C 1.39675 * 133.50672 * 180.02562 * 14 13 10 16 16 C 1.37712 * 119.78155 * 179.97438 * 15 14 13 17 17 C 1.38725 * 120.51321 * 0.02562 * 16 15 14 18 18 C 1.37947 * 120.43871 * 0.02562 * 17 16 15 19 19 C 1.38395 * 126.40264 * 320.52074 * 9 7 2 20 20 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47360 * 33.54463 * 11 10 9 22 22 H 1.08996 * 109.47121 * 153.54992 * 11 10 9 23 23 H 0.96703 * 113.99646 * 184.66048 * 12 11 10 24 24 H 1.08010 * 120.10798 * 359.95782 * 15 14 13 25 25 H 1.07999 * 119.73997 * 179.72309 * 16 15 14 26 26 H 1.08000 * 119.77642 * 179.97438 * 17 16 15 27 27 H 1.08002 * 120.08156 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3846 2.1103 -1.3943 5 1 1.5051 2.6182 0.8077 6 1 3.5964 1.4107 0.5863 7 6 2.0083 -1.2030 0.0005 8 1 1.5371 -2.0986 0.3777 9 7 3.2941 -1.2536 -0.4787 10 6 4.3279 -1.9726 0.0492 11 6 4.2346 -2.8508 1.2703 12 8 4.4549 -2.0626 2.4418 13 7 5.4051 -1.7884 -0.6564 14 6 5.1406 -0.9408 -1.6852 15 6 5.9153 -0.4157 -2.7221 16 6 5.3445 0.4423 -3.6355 17 6 4.0054 0.7901 -3.5339 18 6 3.2265 0.2813 -2.5153 19 6 3.7844 -0.5854 -1.5871 20 1 -0.4850 0.8400 -0.0004 21 1 3.2439 -3.3031 1.3177 22 1 4.9896 -3.6348 1.2125 23 1 4.4801 -2.5750 3.2615 24 1 6.9587 -0.6816 -2.8070 25 1 5.9452 0.8514 -4.4343 26 1 3.5700 1.4644 -4.2565 27 1 2.1847 0.5562 -2.4414 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058004173.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 2.951695 kcal Electronic energy + Delta-G solvation = -14511.924416 eV Core-core repulsion = 12041.614686 eV Total energy + Delta-G solvation = -2470.309730 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.90254 -38.39384 -37.35941 -36.02623 -33.77776 -31.20454 -30.86548 -27.61605 -27.13518 -23.19980 -22.89394 -21.23631 -20.00570 -18.55960 -18.15933 -17.60008 -16.43276 -16.34710 -15.88928 -15.36271 -15.01305 -14.85500 -14.67769 -14.45504 -13.37862 -13.10552 -12.90910 -12.80156 -12.42324 -12.24390 -11.94866 -11.76667 -11.07241 -10.86970 -10.71309 -9.20921 -8.97325 -8.94279 -6.61318 0.08333 0.76212 1.07674 1.14558 1.28312 1.80686 1.97043 2.34712 2.60323 3.04859 3.26302 3.83167 3.98755 4.21226 4.28642 4.34201 4.44420 4.63433 4.68923 4.75951 5.00400 5.19848 5.46139 5.63635 5.66790 5.82785 5.92940 6.17059 6.56887 6.92271 7.08693 7.20821 8.16558 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.018587 C = 0.011401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.294079 B = 1506.070267 C = 2455.326633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.063 3.937 3 Si 0.910 3.090 4 H -0.222 1.222 5 H -0.266 1.266 6 H -0.297 1.297 7 C -0.371 4.371 8 H 0.104 0.896 9 N -0.315 5.315 10 C 0.200 3.800 11 C 0.177 3.823 12 O -0.584 6.584 13 N -0.523 5.523 14 C 0.003 3.997 15 C -0.083 4.083 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.017 4.017 20 H 0.294 0.706 21 H 0.071 0.929 22 H 0.099 0.901 23 H 0.404 0.596 24 H 0.143 0.857 25 H 0.169 0.831 26 H 0.157 0.843 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 0.248 -2.719 6.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.149 4.149 3 Si 0.734 3.266 4 H -0.146 1.146 5 H -0.192 1.192 6 H -0.223 1.223 7 C -0.498 4.498 8 H 0.121 0.879 9 N 0.011 4.989 10 C -0.062 4.062 11 C 0.098 3.902 12 O -0.393 6.393 13 N -0.247 5.247 14 C -0.120 4.120 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.131 4.131 20 H 0.105 0.895 21 H 0.089 0.911 22 H 0.117 0.883 23 H 0.255 0.745 24 H 0.161 0.839 25 H 0.187 0.813 26 H 0.174 0.826 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.641 0.417 -2.849 7.238 hybrid contribution -1.019 0.383 0.789 1.344 sum 5.622 0.800 -2.060 6.041 Atomic orbital electron populations 1.69770 1.07118 1.30689 1.40739 1.25712 0.95552 1.00967 0.92643 0.86434 0.78313 0.80406 0.81430 1.14550 1.19173 1.22319 1.19094 0.86228 0.98263 1.46222 0.87891 1.41546 1.08691 1.31670 1.17021 1.23838 0.82628 1.01190 0.98515 1.20144 1.01717 0.89048 0.79274 1.86531 1.95880 1.39375 1.17469 1.70165 1.25631 1.20891 1.08056 1.19563 0.92476 1.01117 0.98868 1.20501 0.99600 0.97829 0.92354 1.21191 0.94903 0.98588 0.99830 1.21174 0.94555 1.00863 0.97336 1.20296 1.00087 0.98564 0.95648 1.19492 0.96516 1.03901 0.93160 0.89516 0.91129 0.88281 0.74480 0.83942 0.81318 0.82585 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.31 13.95 21.65 0.30 -46.00 15 2 C 0.06 3.43 4.91 84.92 0.42 3.85 15 3 Si 0.91 44.24 24.52 68.60 1.68 45.92 15 4 H -0.22 -9.82 5.50 99.48 0.55 -9.28 15 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.30 -16.33 7.11 99.48 0.71 -15.62 15 7 C -0.37 -20.67 9.83 84.00 0.83 -19.84 15 8 H 0.10 5.88 7.73 -2.91 -0.02 5.86 15 9 N -0.32 -16.93 2.44 -333.12 -0.81 -17.74 15 10 C 0.20 9.90 7.46 137.76 1.03 10.93 15 11 C 0.18 6.73 7.27 71.23 0.52 7.25 15 12 O -0.58 -21.73 13.64 -148.98 -2.03 -23.77 15 13 N -0.52 -25.99 11.27 -179.55 -2.02 -28.01 15 14 C 0.00 0.15 7.23 39.42 0.28 0.44 15 15 C -0.08 -3.14 10.10 22.49 0.23 -2.91 15 16 C -0.12 -3.93 10.02 22.26 0.22 -3.70 15 17 C -0.12 -4.17 10.03 22.32 0.22 -3.95 15 18 C -0.13 -5.66 6.90 22.31 0.15 -5.51 15 19 C -0.02 -0.88 5.28 38.78 0.20 -0.67 15 20 H 0.29 14.54 8.31 -92.71 -0.77 13.77 15 21 H 0.07 2.55 7.62 -2.39 -0.02 2.53 15 22 H 0.10 3.05 8.14 -2.39 -0.02 3.03 15 23 H 0.40 9.15 9.12 -74.06 -0.68 8.47 15 24 H 0.14 4.52 8.06 -2.91 -0.02 4.49 15 25 H 0.17 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.16 4.17 8.06 -2.91 -0.02 4.14 15 27 H 0.11 4.97 5.81 -2.91 -0.02 4.95 15 Total: -1.00 -70.79 235.46 1.59 -69.20 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.37 Total: 14.53 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.11 Total: -14.13 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -2.54 Total: -91.76 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -2.03 Total: -23.77 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.68 Total: 45.92 kcal Total: -70.79 1.59 -69.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058004173.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.154 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds