Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99843 * 2 1 4 4 H 1.48503 * 109.47180 * 240.00192 * 3 2 1 5 5 H 1.48500 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47285 * 119.99784 * 3 2 1 7 7 C 1.37874 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99792 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00278 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46867 * 179.97438 * 9 7 2 11 11 C 1.35871 * 116.99533 * 179.97438 * 10 9 7 12 12 C 1.38290 * 120.25163 * 359.72621 * 11 10 9 13 13 C 1.38651 * 120.20641 * 180.33532 * 12 11 10 14 14 C 1.37863 * 120.74151 * 359.90516 * 13 12 11 15 15 C 1.38979 * 120.07049 * 0.06123 * 14 13 12 16 16 O 1.34829 * 133.38270 * 179.97438 * 15 14 13 17 17 C 1.34500 * 110.88931 * 180.02562 * 16 15 14 18 18 C 1.33984 * 110.12668 * 359.97438 * 17 16 15 19 19 C 1.39805 * 120.24862 * 180.02562 * 11 10 9 20 20 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46938 * 59.99808 * 9 7 2 22 22 H 1.09000 * 109.47131 * 299.99865 * 9 7 2 23 23 H 1.08004 * 119.89606 * 0.25817 * 12 11 10 24 24 H 1.07998 * 119.63094 * 179.97438 * 13 12 11 25 25 H 1.08002 * 119.96868 * 180.02562 * 14 13 12 26 26 H 1.07992 * 124.93986 * 180.02562 * 17 16 15 27 27 H 1.08000 * 126.90557 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.6604 -4.8408 0.0011 12 6 0.2903 -5.0280 0.0073 13 6 -0.2386 -6.3096 0.0149 14 6 0.5878 -7.4131 0.0143 15 6 1.9679 -7.2495 0.0074 16 8 3.0029 -8.1136 0.0057 17 6 4.1764 -7.4563 -0.0014 18 6 3.9638 -6.1334 -0.0052 19 6 2.5072 -5.9533 0.0017 20 1 -0.4850 0.8401 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 -0.3698 -4.1732 0.0075 24 1 -1.3101 -6.4451 0.0201 25 1 0.1624 -8.4058 0.0199 26 1 5.1486 -7.9264 -0.0045 27 1 4.7136 -5.3561 -0.0113 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059584900.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = -35.349810 kcal Electronic energy + Delta-G solvation = -13736.079290 eV Core-core repulsion = 11231.815931 eV Total energy + Delta-G solvation = -2504.263359 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34634 -40.37372 -37.61549 -35.09794 -33.58269 -30.84151 -30.51442 -29.17483 -25.51352 -23.82237 -23.13987 -21.98778 -19.28676 -18.60097 -18.02669 -17.50443 -17.16374 -16.62496 -16.36148 -16.11896 -15.46426 -14.36493 -14.20714 -13.89020 -13.56290 -13.45050 -13.10785 -12.77567 -12.72199 -12.29456 -12.10707 -11.96119 -11.42571 -10.95913 -10.66025 -9.64254 -8.70941 -8.41690 -6.56536 0.06135 0.32058 1.37961 1.42695 1.46809 1.51194 1.86789 2.23578 2.62032 2.69879 2.92998 3.62720 3.90832 4.00617 4.20728 4.23700 4.45456 4.63666 4.68100 4.87007 4.92317 5.11046 5.27901 5.39402 5.46388 5.48478 5.60266 5.79083 6.14007 6.45411 6.72026 7.15248 8.70405 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.048564 B = 0.006773 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.421480 B = 4133.353156 C = 4694.624385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.211 3.789 10 O -0.332 6.332 11 C 0.153 3.847 12 C -0.252 4.252 13 C -0.045 4.045 14 C -0.151 4.151 15 C 0.073 3.927 16 O -0.195 6.195 17 C 0.014 3.986 18 C -0.220 4.220 19 C -0.202 4.202 20 H 0.275 0.725 21 H 0.004 0.996 22 H 0.004 0.996 23 H 0.122 0.878 24 H 0.172 0.828 25 H 0.168 0.832 26 H 0.261 0.739 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -13.759 0.018 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.084 0.916 9 C 0.137 3.863 10 O -0.246 6.246 11 C 0.106 3.894 12 C -0.271 4.271 13 C -0.062 4.062 14 C -0.170 4.170 15 C 0.025 3.975 16 O -0.097 6.097 17 C -0.049 4.049 18 C -0.239 4.239 19 C -0.203 4.203 20 H 0.084 0.916 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.140 0.860 24 H 0.190 0.810 25 H 0.185 0.815 26 H 0.276 0.724 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.639 -13.849 0.018 14.319 hybrid contribution 0.003 1.441 -0.006 1.441 sum 3.642 -12.408 0.013 12.932 Atomic orbital electron populations 1.70046 1.07717 1.29201 1.49237 1.25955 0.96041 1.03303 0.93310 0.85156 0.78095 0.76243 0.79475 1.18920 1.19635 1.18907 1.21263 0.94322 0.90117 1.54059 0.91648 1.20251 0.88434 0.82422 0.95146 1.86037 1.39043 1.12752 1.86726 1.19016 0.92310 0.84381 0.93734 1.21379 0.93171 1.00166 1.12377 1.21052 1.01303 0.89214 0.94670 1.20127 0.86536 1.01339 1.08965 1.19698 0.90379 0.85837 1.01549 1.84016 1.13655 1.35620 1.76379 1.24710 0.88947 0.90503 1.00727 1.22685 0.93086 0.98203 1.09952 1.19643 0.95325 0.92178 1.13191 0.91612 0.97806 0.97777 0.86018 0.81039 0.81481 0.72356 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 13.29 21.45 0.28 -54.22 15 2 C 0.01 0.78 5.46 84.65 0.46 1.24 15 3 Si 0.99 43.67 29.54 68.60 2.03 45.70 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 7 C -0.56 -33.40 9.43 25.60 0.24 -33.16 15 8 H 0.07 3.84 7.81 -2.91 -0.02 3.82 15 9 C 0.21 12.05 4.50 71.24 0.32 12.37 15 10 O -0.33 -17.70 10.13 -92.10 -0.93 -18.64 15 11 C 0.15 6.95 6.71 22.66 0.15 7.10 15 12 C -0.25 -10.15 9.04 22.38 0.20 -9.94 15 13 C -0.04 -1.34 10.01 22.28 0.22 -1.12 15 14 C -0.15 -4.24 10.06 22.36 0.22 -4.02 15 15 C 0.07 2.41 7.41 22.97 0.17 2.58 15 16 O -0.20 -5.48 10.58 -9.64 -0.10 -5.58 15 17 C 0.01 0.34 11.96 66.85 0.80 1.14 15 18 C -0.22 -7.13 11.14 23.53 0.26 -6.87 15 19 C -0.20 -7.97 6.34 -20.14 -0.13 -8.09 15 20 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 21 H 0.00 0.25 7.68 -2.39 -0.02 0.23 15 22 H 0.00 0.26 7.66 -2.39 -0.02 0.24 15 23 H 0.12 5.22 6.30 -2.91 -0.02 5.21 15 24 H 0.17 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 26 H 0.26 2.89 8.06 -2.91 -0.02 2.86 15 27 H 0.16 4.88 8.06 -2.91 -0.02 4.86 15 Total: -1.00 -70.32 246.91 5.39 -64.93 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.18 Total: 6.58 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 2.93 Total: -38.77 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.28 Total: -54.22 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.03 Total: -24.22 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.32 5.39 -64.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059584900.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.583 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds