Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48501 * 109.46501 * 269.99346 * 3 2 1 5 5 H 1.48497 * 109.47305 * 29.98816 * 3 2 1 6 6 H 1.48498 * 109.47510 * 149.99614 * 3 2 1 7 7 C 1.39932 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 197.89839 * 7 2 1 9 9 C 1.41451 * 119.99876 * 17.90310 * 7 2 1 10 10 C 1.40825 * 120.16284 * 204.72195 * 9 7 2 11 11 C 1.37755 * 120.09281 * 180.30104 * 10 9 7 12 12 C 1.38298 * 120.44537 * 359.71483 * 11 10 9 13 13 C 1.40161 * 120.32283 * 0.02986 * 12 11 10 14 14 C 1.47216 * 120.04748 * 179.97438 * 13 12 11 15 15 C 1.34887 * 120.00333 * 0.02562 * 14 13 12 16 16 C 1.46256 * 120.00329 * 179.97438 * 15 14 13 17 17 O 1.21622 * 119.99704 * 0.02562 * 16 15 14 18 18 O 1.34900 * 120.00133 * 180.02562 * 16 15 14 19 19 C 1.39310 * 119.89797 * 359.97416 * 13 12 11 20 20 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.95479 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.77788 * 179.70071 * 11 10 9 23 23 H 1.07997 * 119.84231 * 180.02562 * 12 11 10 24 24 H 1.08005 * 119.99879 * 180.02562 * 14 13 12 25 25 H 1.08005 * 119.99788 * 0.02562 * 15 14 13 26 26 H 0.96703 * 114.00235 * 179.97438 * 18 16 15 27 27 H 1.07997 * 120.21841 * 180.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6528 0.6998 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2343 0.2880 9 6 1.3520 -2.4073 -0.3755 10 6 1.8230 -3.6497 0.0912 11 6 1.1868 -4.8136 -0.2809 12 6 0.0798 -4.7732 -1.1088 13 6 -0.4075 -3.5462 -1.5796 14 6 -1.5860 -3.5104 -2.4610 15 6 -2.1981 -4.6588 -2.8158 16 6 -3.3693 -4.6231 -3.6911 17 8 -3.7911 -3.5579 -4.0994 18 8 -3.9818 -5.7716 -4.0455 19 6 0.2252 -2.3607 -1.2120 20 1 -0.4850 0.8400 -0.0004 21 1 2.6867 -3.6905 0.7382 22 1 1.5552 -5.7640 0.0761 23 1 -0.4117 -5.6916 -1.3941 24 1 -1.9606 -2.5644 -2.8236 25 1 -1.8238 -5.6047 -2.4529 26 1 -4.7459 -5.6474 -4.6250 27 1 -0.1461 -1.4124 -1.5714 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060144856.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -69.955289 kcal Electronic energy + Delta-G solvation = -13399.722011 eV Core-core repulsion = 10893.958046 eV Total energy + Delta-G solvation = -2505.763965 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.79476 -37.80526 -35.86506 -34.22267 -32.94878 -29.70007 -29.05010 -25.40288 -24.24384 -21.30659 -20.78160 -18.81688 -17.91377 -16.96206 -16.47567 -15.30591 -15.24221 -14.87363 -13.94211 -13.76192 -13.04998 -12.67796 -12.49306 -11.92059 -11.54819 -11.39264 -11.31770 -11.19359 -10.84939 -10.56210 -10.29620 -9.75927 -9.71862 -9.66177 -9.19323 -7.59403 -7.33551 -6.87715 -4.49554 1.17024 2.68968 2.83770 3.02568 3.05505 3.11318 3.52703 3.60751 3.85348 4.53036 5.48153 5.52008 5.59644 5.82245 6.11569 6.28838 6.47174 6.58650 6.62960 6.81732 6.90698 7.07609 7.18931 7.37163 7.65275 7.83387 7.86226 8.08402 8.15499 8.42813 8.72920 8.76338 10.06577 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.007076 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.963220 B = 3956.039683 C = 4691.121399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.462 4.462 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.206 4.206 11 C -0.100 4.100 12 C -0.211 4.211 13 C -0.090 4.090 14 C 0.050 3.950 15 C -0.257 4.257 16 C 0.513 3.487 17 O -0.536 6.536 18 O -0.511 6.511 19 C -0.117 4.117 20 H 0.284 0.716 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.126 0.874 25 H 0.137 0.863 26 H 0.401 0.599 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -4.376 -3.432 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.119 4.119 12 C -0.230 4.230 13 C -0.091 4.091 14 C 0.031 3.969 15 C -0.276 4.276 16 C 0.361 3.639 17 O -0.428 6.428 18 O -0.320 6.320 19 C -0.136 4.136 20 H 0.095 0.905 21 H 0.114 0.886 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.155 0.845 26 H 0.257 0.743 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.388 -3.998 -3.249 5.678 hybrid contribution -0.223 0.788 -0.280 0.866 sum -2.610 -3.210 -3.529 5.438 Atomic orbital electron populations 1.69781 1.07614 1.29638 1.34827 1.25932 0.94768 1.01509 0.92110 0.86263 0.80447 0.80345 0.79438 1.19161 1.20229 1.18558 1.19604 0.98308 0.91055 1.40136 0.90108 1.17570 0.91248 0.92389 0.89186 1.21172 1.03367 0.92780 1.05280 1.20501 0.96179 0.96793 0.98387 1.20611 1.00759 0.95368 1.06261 1.18693 0.95660 0.94698 1.00025 1.22770 0.89799 0.97329 0.86997 1.21898 0.98186 1.00853 1.06622 1.21213 0.83261 0.80859 0.78547 1.90897 1.65773 1.31438 1.54683 1.85078 1.45855 1.35959 1.65157 1.21741 0.97680 0.95896 0.98269 0.90545 0.88585 0.88821 0.88447 0.85659 0.84502 0.74327 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.81 10.96 55.55 0.61 -19.20 15 2 C 0.07 1.81 5.14 -17.35 -0.09 1.72 15 3 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.46 -11.72 9.05 -37.73 -0.34 -12.06 15 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 15 9 C 0.10 2.50 5.57 -106.88 -0.60 1.91 15 10 C -0.21 -4.80 9.78 -38.78 -0.38 -5.18 15 11 C -0.10 -2.13 10.00 -39.74 -0.40 -2.52 15 12 C -0.21 -4.43 9.42 -38.84 -0.37 -4.79 15 13 C -0.09 -2.01 5.86 -105.13 -0.62 -2.62 15 14 C 0.05 0.97 9.45 -37.13 -0.35 0.62 15 15 C -0.26 -4.48 9.53 -37.55 -0.36 -4.84 15 16 C 0.51 8.53 8.23 33.95 0.28 8.81 15 17 O -0.54 -10.30 16.96 -19.36 -0.33 -10.63 15 18 O -0.51 -6.65 13.56 -41.04 -0.56 -7.21 15 19 C -0.12 -2.88 8.44 -38.36 -0.32 -3.21 15 20 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 21 H 0.10 2.08 8.06 -52.49 -0.42 1.66 15 22 H 0.09 1.70 8.06 -52.48 -0.42 1.27 15 23 H 0.10 1.79 6.14 -52.49 -0.32 1.47 15 24 H 0.13 2.46 7.52 -52.48 -0.39 2.07 15 25 H 0.14 2.22 6.06 -52.48 -0.32 1.90 15 26 H 0.40 3.29 8.98 45.56 0.41 3.70 15 27 H 0.13 3.21 6.16 -52.49 -0.32 2.88 15 LS Contribution 250.05 15.07 3.77 3.77 Total: -1.00 -27.92 250.05 -6.42 -34.35 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -1.34 Total: 8.06 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.54 Total: -22.17 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.88 Total: -17.84 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.92 -6.42 -34.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060144856.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.610 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds