Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48501 * 109.46501 * 269.99346 * 3 2 1 5 5 H 1.48497 * 109.47305 * 29.98816 * 3 2 1 6 6 H 1.48498 * 109.47510 * 149.99614 * 3 2 1 7 7 C 1.39932 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 197.89839 * 7 2 1 9 9 C 1.41451 * 119.99876 * 17.90310 * 7 2 1 10 10 C 1.40825 * 120.16284 * 204.72195 * 9 7 2 11 11 C 1.37755 * 120.09281 * 180.30104 * 10 9 7 12 12 C 1.38298 * 120.44537 * 359.71483 * 11 10 9 13 13 C 1.40161 * 120.32283 * 0.02986 * 12 11 10 14 14 C 1.47216 * 120.04748 * 179.97438 * 13 12 11 15 15 C 1.34887 * 120.00333 * 0.02562 * 14 13 12 16 16 C 1.46256 * 120.00329 * 179.97438 * 15 14 13 17 17 O 1.21622 * 119.99704 * 0.02562 * 16 15 14 18 18 O 1.34900 * 120.00133 * 180.02562 * 16 15 14 19 19 C 1.39310 * 119.89797 * 359.97416 * 13 12 11 20 20 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.95479 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.77788 * 179.70071 * 11 10 9 23 23 H 1.07997 * 119.84231 * 180.02562 * 12 11 10 24 24 H 1.08005 * 119.99879 * 180.02562 * 14 13 12 25 25 H 1.08005 * 119.99788 * 0.02562 * 15 14 13 26 26 H 0.96703 * 114.00235 * 179.97438 * 18 16 15 27 27 H 1.07997 * 120.21841 * 180.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6528 0.6998 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2343 0.2880 9 6 1.3520 -2.4073 -0.3755 10 6 1.8230 -3.6497 0.0912 11 6 1.1868 -4.8136 -0.2809 12 6 0.0798 -4.7732 -1.1088 13 6 -0.4075 -3.5462 -1.5796 14 6 -1.5860 -3.5104 -2.4610 15 6 -2.1981 -4.6588 -2.8158 16 6 -3.3693 -4.6231 -3.6911 17 8 -3.7911 -3.5579 -4.0994 18 8 -3.9818 -5.7716 -4.0455 19 6 0.2252 -2.3607 -1.2120 20 1 -0.4850 0.8400 -0.0004 21 1 2.6867 -3.6905 0.7382 22 1 1.5552 -5.7640 0.0761 23 1 -0.4117 -5.6916 -1.3941 24 1 -1.9606 -2.5644 -2.8236 25 1 -1.8238 -5.6047 -2.4529 26 1 -4.7459 -5.6474 -4.6250 27 1 -0.1461 -1.4124 -1.5714 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060144856.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -86.131204 kcal Electronic energy + Delta-G solvation = -13400.423452 eV Core-core repulsion = 10893.958046 eV Total energy + Delta-G solvation = -2506.465405 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.11957 -39.51527 -37.11626 -35.93949 -34.60014 -31.47288 -30.69143 -27.20889 -25.73637 -23.01991 -22.34814 -20.40195 -19.23673 -18.69082 -17.89043 -17.00187 -16.54737 -16.54165 -15.56472 -15.37038 -14.56698 -14.29131 -14.10388 -13.66378 -13.19367 -12.92489 -12.82878 -12.63967 -12.57290 -12.13292 -11.73498 -11.48052 -11.42612 -11.31998 -10.90913 -9.38876 -9.02748 -8.65017 -6.37998 -0.35302 1.00092 1.20310 1.38592 1.51408 1.52107 2.10521 2.19964 2.29090 2.75942 3.70741 4.00590 4.12649 4.40415 4.51826 4.69054 4.85255 4.96726 5.12812 5.23627 5.33737 5.47021 5.52784 5.61850 5.91793 6.05008 6.08758 6.31786 6.61243 6.90041 6.94684 6.96505 8.30550 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.007076 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.963220 B = 3956.039683 C = 4691.121399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.079 0.921 9 C 0.069 3.931 10 C -0.223 4.223 11 C -0.099 4.099 12 C -0.206 4.206 13 C -0.088 4.088 14 C 0.021 3.979 15 C -0.222 4.222 16 C 0.521 3.479 17 O -0.563 6.563 18 O -0.495 6.495 19 C -0.153 4.153 20 H 0.288 0.712 21 H 0.103 0.897 22 H 0.131 0.869 23 H 0.133 0.867 24 H 0.115 0.885 25 H 0.160 0.840 26 H 0.426 0.574 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -6.114 -3.934 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.097 0.903 9 C 0.067 3.933 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.225 4.225 13 C -0.088 4.088 14 C 0.002 3.998 15 C -0.241 4.241 16 C 0.369 3.631 17 O -0.457 6.457 18 O -0.307 6.307 19 C -0.173 4.173 20 H 0.099 0.901 21 H 0.121 0.879 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.133 0.867 25 H 0.177 0.823 26 H 0.285 0.715 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.922 -5.774 -3.763 7.486 hybrid contribution -0.223 1.067 -0.222 1.112 sum -3.145 -4.708 -3.985 6.923 Atomic orbital electron populations 1.69850 1.08991 1.30646 1.35863 1.26737 0.95455 1.04538 0.91214 0.85211 0.79142 0.75991 0.79457 1.18843 1.19408 1.18033 1.19848 0.98528 0.92356 1.42227 0.90335 1.17926 0.92027 0.93489 0.89876 1.21410 1.04029 0.93034 1.05788 1.20913 0.95671 0.97548 0.97541 1.21053 1.00387 0.96036 1.05043 1.18922 0.95871 0.94433 0.99599 1.22536 0.90369 0.98066 0.88792 1.22124 0.97079 1.00666 1.04232 1.21014 0.82968 0.81153 0.77972 1.90909 1.66454 1.32841 1.55529 1.85016 1.46697 1.33691 1.65275 1.21641 0.99067 0.96287 1.00256 0.90100 0.87880 0.85067 0.84887 0.86727 0.82308 0.71458 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.13 10.96 21.82 0.24 -42.89 15 2 C 0.04 1.76 5.14 85.25 0.44 2.20 15 3 Si 0.98 37.97 29.60 68.60 2.03 40.00 15 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 15 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 7 C -0.50 -26.50 9.05 23.47 0.21 -26.28 15 8 H 0.08 4.00 7.91 -2.91 -0.02 3.97 15 9 C 0.07 3.63 5.57 -21.33 -0.12 3.51 15 10 C -0.22 -10.42 9.78 22.79 0.22 -10.19 15 11 C -0.10 -3.98 10.00 22.17 0.22 -3.76 15 12 C -0.21 -8.16 9.42 22.75 0.21 -7.95 15 13 C -0.09 -3.89 5.86 -20.19 -0.12 -4.01 15 14 C 0.02 0.81 9.45 23.86 0.23 1.04 15 15 C -0.22 -7.11 9.53 23.58 0.22 -6.89 15 16 C 0.52 15.75 8.23 69.91 0.58 16.33 15 17 O -0.56 -20.67 16.96 19.44 0.33 -20.34 15 18 O -0.50 -10.78 13.56 -58.15 -0.79 -11.57 15 19 C -0.15 -7.88 8.44 23.06 0.19 -7.68 15 20 H 0.29 13.67 8.30 -92.71 -0.77 12.90 15 21 H 0.10 4.51 8.06 -2.91 -0.02 4.48 15 22 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.13 4.25 6.14 -2.91 -0.02 4.23 15 24 H 0.11 4.63 7.52 -2.91 -0.02 4.61 15 25 H 0.16 4.38 6.06 -2.91 -0.02 4.36 15 26 H 0.43 5.18 8.98 -74.06 -0.66 4.52 15 27 H 0.11 5.72 6.16 -2.91 -0.02 5.71 15 Total: -1.00 -61.54 250.05 4.64 -56.89 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.54 Total: 21.57 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.29 Total: -43.67 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.24 Total: -42.89 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.46 Total: -31.91 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -61.54 4.64 -56.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060144856.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.238 kcal (2) G-P(sol) polarization free energy of solvation -61.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds