Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86804 * 120.00079 * 2 1 4 4 H 1.48504 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46732 * 299.99563 * 3 2 1 6 6 H 1.48497 * 109.47188 * 59.99528 * 3 2 1 7 7 C 1.38905 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00214 * 160.01930 * 7 2 1 9 9 N 1.37401 * 120.00419 * 340.29377 * 7 2 1 10 10 C 1.34628 * 124.44822 * 326.44062 * 9 7 2 11 11 O 1.21412 * 125.75928 * 359.97438 * 10 9 7 12 12 C 1.47755 * 108.48310 * 180.02562 * 10 9 7 13 13 C 1.38517 * 135.51896 * 180.02562 * 12 10 9 14 14 C 1.38952 * 118.63299 * 179.97438 * 13 12 10 15 15 N 1.31770 * 121.21493 * 0.02562 * 14 13 12 16 16 C 1.32133 * 122.36016 * 359.97438 * 15 14 13 17 17 C 1.38576 * 120.24096 * 359.97438 * 16 15 14 18 18 C 1.34584 * 124.45431 * 146.13881 * 9 7 2 19 19 O 1.21440 * 125.66173 * 0.02562 * 18 9 7 20 20 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.68393 * 359.93590 * 13 12 10 22 22 H 1.08002 * 119.39046 * 180.02562 * 14 13 12 23 23 H 1.07989 * 119.87581 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3463 0.0006 5 1 1.8893 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0084 -1.2030 0.0005 8 1 3.0397 -1.2314 -0.3191 9 7 1.3818 -2.3579 0.4023 10 6 0.4360 -2.4181 1.3585 11 8 0.0079 -1.4759 1.9933 12 6 0.0077 -3.8246 1.5057 13 6 -0.9040 -4.5022 2.2984 14 6 -1.0298 -5.8771 2.1419 15 7 -0.3019 -6.5336 1.2612 16 6 0.5802 -5.9315 0.4832 17 6 0.7692 -4.5616 0.5725 18 6 1.6287 -3.5767 -0.1123 19 8 2.4288 -3.8252 -0.9915 20 1 -0.4850 0.8401 -0.0004 21 1 -1.5043 -3.9728 3.0237 22 1 -1.7372 -6.4177 2.7533 23 1 1.1552 -6.5090 -0.2253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070906480.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = 1.571593 kcal Electronic energy + Delta-G solvation = -14074.064213 eV Core-core repulsion = 11467.861543 eV Total energy + Delta-G solvation = -2606.202670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.048 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42998 -38.79875 -37.29385 -34.66594 -33.34416 -31.50722 -30.89190 -26.31643 -24.65196 -23.30153 -21.69577 -19.93193 -17.80629 -17.12489 -16.09442 -15.72869 -15.57898 -14.87675 -14.49028 -14.06542 -13.67197 -13.43433 -13.39708 -12.73625 -12.06742 -11.76219 -11.17477 -11.05809 -10.48015 -9.91008 -9.73810 -9.63291 -9.41323 -9.05764 -8.95564 -8.17379 -6.60583 -4.37196 0.58034 1.15337 2.78415 3.11410 3.18326 3.24038 3.69876 4.06822 4.19733 4.24060 4.29872 4.56154 4.93078 5.03196 5.21342 5.27626 5.45086 5.84854 6.03683 6.18255 6.64499 7.25005 7.61879 7.73620 7.95182 8.45581 8.53875 8.95132 9.45980 10.48392 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.049419 B = 0.010326 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.446034 B = 2710.965540 C = 3166.531980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.059 3.941 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.361 4.361 8 H 0.110 0.890 9 N -0.396 5.396 10 C 0.532 3.468 11 O -0.440 6.440 12 C -0.075 4.075 13 C -0.122 4.122 14 C 0.116 3.884 15 N -0.482 5.482 16 C 0.152 3.848 17 C -0.187 4.187 18 C 0.538 3.462 19 O -0.496 6.496 20 H 0.276 0.724 21 H 0.146 0.854 22 H 0.166 0.834 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.000 -6.783 3.955 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.154 4.154 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.485 4.485 8 H 0.127 0.873 9 N -0.123 5.123 10 C 0.320 3.680 11 O -0.310 6.310 12 C -0.087 4.087 13 C -0.142 4.142 14 C -0.044 4.044 15 N -0.191 5.191 16 C -0.002 4.002 17 C -0.193 4.193 18 C 0.327 3.673 19 O -0.373 6.373 20 H 0.087 0.913 21 H 0.164 0.836 22 H 0.183 0.817 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.043 -7.071 3.723 8.248 hybrid contribution 0.222 1.684 0.036 1.699 sum -1.821 -5.387 3.759 6.817 Atomic orbital electron populations 1.69920 1.06706 1.28984 1.39801 1.25432 0.95239 1.00450 0.94233 0.85789 0.79933 0.80367 0.78082 1.18741 1.20336 1.20038 1.19517 0.96945 0.82352 1.49736 0.87282 1.42037 1.33659 1.07680 1.28941 1.17975 0.82393 0.86397 0.81273 1.90626 1.54563 1.41499 1.44339 1.21582 0.95033 0.97001 0.95042 1.21747 0.97724 0.95011 0.99759 1.23051 0.96012 0.91002 0.94335 1.67770 1.05933 1.40024 1.05398 1.22269 0.93161 0.89628 0.95165 1.22100 1.00706 0.96349 1.00146 1.18292 0.83289 0.83548 0.82158 1.90627 1.35134 1.82595 1.28974 0.91336 0.83586 0.81679 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.23 11.22 55.49 0.62 -22.61 14 2 C 0.06 1.59 4.79 -17.49 -0.08 1.51 14 3 Si 0.93 20.58 29.60 -169.99 -5.03 15.55 14 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 14 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 7 C -0.36 -10.00 9.56 -14.81 -0.14 -10.14 14 8 H 0.11 2.95 7.91 -52.48 -0.42 2.54 14 9 N -0.40 -10.47 2.71 -62.80 -0.17 -10.64 14 10 C 0.53 13.39 7.32 -12.44 -0.09 13.30 14 11 O -0.44 -12.05 15.33 5.44 0.08 -11.96 14 12 C -0.07 -1.51 6.48 -104.77 -0.68 -2.19 14 13 C -0.12 -1.88 10.17 -39.21 -0.40 -2.28 14 14 C 0.12 1.54 11.19 -17.31 -0.19 1.35 14 15 N -0.48 -7.34 10.33 -12.94 -0.13 -7.47 14 16 C 0.15 2.51 11.25 -17.30 -0.19 2.31 14 17 C -0.19 -3.75 6.46 -104.84 -0.68 -4.42 14 18 C 0.54 13.02 7.95 -12.54 -0.10 12.92 14 19 O -0.50 -12.71 17.75 5.42 0.10 -12.62 14 20 H 0.28 7.28 8.31 -40.82 -0.34 6.95 14 21 H 0.15 1.92 8.06 -52.48 -0.42 1.50 14 22 H 0.17 1.47 8.06 -52.49 -0.42 1.05 14 23 H 0.17 2.33 8.06 -52.49 -0.42 1.91 14 LS Contribution 223.80 15.07 3.37 3.37 Total: -1.00 -31.97 223.80 -4.54 -36.50 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: -0.82 Total: -2.49 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.56 Total: 12.36 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.32 Total: -40.72 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.18 Total: -24.58 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.97 -4.54 -36.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906480.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.074 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds