Wall clock time and date at job start Mon Mar 30 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86804 * 120.00079 * 2 1 4 4 H 1.48504 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46732 * 299.99563 * 3 2 1 6 6 H 1.48497 * 109.47188 * 59.99528 * 3 2 1 7 7 C 1.38905 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00214 * 160.01930 * 7 2 1 9 9 N 1.37401 * 120.00419 * 340.29377 * 7 2 1 10 10 C 1.34628 * 124.44822 * 326.44062 * 9 7 2 11 11 O 1.21412 * 125.75928 * 359.97438 * 10 9 7 12 12 C 1.47755 * 108.48310 * 180.02562 * 10 9 7 13 13 C 1.38517 * 135.51896 * 180.02562 * 12 10 9 14 14 C 1.38952 * 118.63299 * 179.97438 * 13 12 10 15 15 N 1.31770 * 121.21493 * 0.02562 * 14 13 12 16 16 C 1.32133 * 122.36016 * 359.97438 * 15 14 13 17 17 C 1.38576 * 120.24096 * 359.97438 * 16 15 14 18 18 C 1.34584 * 124.45431 * 146.13881 * 9 7 2 19 19 O 1.21440 * 125.66173 * 0.02562 * 18 9 7 20 20 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.68393 * 359.93590 * 13 12 10 22 22 H 1.08002 * 119.39046 * 180.02562 * 14 13 12 23 23 H 1.07989 * 119.87581 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3463 0.0006 5 1 1.8893 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0084 -1.2030 0.0005 8 1 3.0397 -1.2314 -0.3191 9 7 1.3818 -2.3579 0.4023 10 6 0.4360 -2.4181 1.3585 11 8 0.0079 -1.4759 1.9933 12 6 0.0077 -3.8246 1.5057 13 6 -0.9040 -4.5022 2.2984 14 6 -1.0298 -5.8771 2.1419 15 7 -0.3019 -6.5336 1.2612 16 6 0.5802 -5.9315 0.4832 17 6 0.7692 -4.5616 0.5725 18 6 1.6287 -3.5767 -0.1123 19 8 2.4288 -3.8252 -0.9915 20 1 -0.4850 0.8401 -0.0004 21 1 -1.5043 -3.9728 3.0237 22 1 -1.7372 -6.4177 2.7533 23 1 1.1552 -6.5090 -0.2253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070906480.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:45 Heat of formation + Delta-G solvation = -21.652359 kcal Electronic energy + Delta-G solvation = -14075.071279 eV Core-core repulsion = 11467.861543 eV Total energy + Delta-G solvation = -2607.209736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.12419 -40.28031 -39.23372 -36.62086 -35.16038 -33.10053 -32.35859 -28.14890 -26.27787 -24.91304 -23.34894 -21.62308 -19.64065 -18.80253 -17.82858 -17.46169 -17.11699 -16.64763 -16.20073 -15.73772 -15.23826 -15.02929 -14.77234 -14.70264 -13.81486 -13.29897 -13.11344 -12.94475 -12.18974 -11.62164 -11.46077 -11.32282 -11.11499 -10.62262 -10.38015 -10.17509 -8.63140 -6.48773 -0.95807 -0.15728 1.15193 1.33184 1.38616 1.52146 1.93499 2.31208 2.41319 2.69167 2.75241 3.03697 3.33937 3.53812 3.63801 3.89036 4.24835 4.58425 4.70181 4.87975 5.16398 5.42694 5.65206 5.80701 6.43930 6.63980 6.68410 6.94562 7.49241 8.47316 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.049419 B = 0.010326 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.446034 B = 2710.965540 C = 3166.531980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.014 3.986 3 Si 1.003 2.997 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.397 4.397 8 H 0.100 0.900 9 N -0.423 5.423 10 C 0.525 3.475 11 O -0.478 6.478 12 C -0.098 4.098 13 C -0.104 4.104 14 C 0.149 3.851 15 N -0.479 5.479 16 C 0.172 3.828 17 C -0.211 4.211 18 C 0.533 3.467 19 O -0.526 6.526 20 H 0.279 0.721 21 H 0.174 0.826 22 H 0.226 0.774 23 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -8.580 5.122 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.521 4.521 8 H 0.118 0.882 9 N -0.150 5.150 10 C 0.315 3.685 11 O -0.351 6.351 12 C -0.109 4.109 13 C -0.125 4.125 14 C -0.011 4.011 15 N -0.188 5.188 16 C 0.019 3.981 17 C -0.217 4.217 18 C 0.325 3.675 19 O -0.405 6.405 20 H 0.089 0.911 21 H 0.192 0.808 22 H 0.242 0.758 23 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.184 -8.904 4.880 10.641 hybrid contribution 0.486 2.042 -0.256 2.115 sum -2.698 -6.861 4.623 8.702 Atomic orbital electron populations 1.69998 1.08212 1.29889 1.41124 1.26456 0.96073 1.03752 0.93152 0.84776 0.78872 0.75578 0.78426 1.17824 1.18970 1.19733 1.19726 0.97165 0.83925 1.51333 0.88189 1.42337 1.34481 1.08191 1.30025 1.18676 0.81351 0.88364 0.80108 1.90570 1.55615 1.43368 1.45596 1.21301 0.97940 0.93897 0.97774 1.22229 0.95814 0.95986 0.98456 1.24020 0.94598 0.89933 0.92564 1.67994 1.05669 1.39572 1.05523 1.22623 0.92647 0.87955 0.94885 1.21733 1.01413 0.97269 1.01246 1.18889 0.82921 0.84046 0.81673 1.90578 1.36479 1.83137 1.30275 0.91142 0.80847 0.75764 0.79351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.31 11.22 21.65 0.24 -50.06 14 2 C 0.01 0.79 4.79 84.92 0.41 1.20 14 3 Si 1.00 43.29 29.60 68.60 2.03 45.32 14 4 H -0.25 -10.48 7.11 99.48 0.71 -9.77 14 5 H -0.26 -10.78 7.11 99.48 0.71 -10.08 14 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 14 7 C -0.40 -23.09 9.56 83.98 0.80 -22.28 14 8 H 0.10 5.74 7.91 -2.91 -0.02 5.72 14 9 N -0.42 -23.38 2.71 -589.46 -1.59 -24.97 14 10 C 0.53 27.27 7.32 86.78 0.63 27.90 14 11 O -0.48 -27.14 15.33 -3.44 -0.05 -27.19 14 12 C -0.10 -3.86 6.48 -19.96 -0.13 -3.99 14 13 C -0.10 -2.83 10.17 22.51 0.23 -2.60 14 14 C 0.15 3.07 11.19 84.87 0.95 4.02 14 15 N -0.48 -12.22 10.33 -194.85 -2.01 -14.23 14 16 C 0.17 5.19 11.25 84.73 0.95 6.14 14 17 C -0.21 -8.31 6.46 -20.00 -0.13 -8.44 14 18 C 0.53 26.76 7.95 86.74 0.69 27.45 14 19 O -0.53 -28.01 17.75 -3.53 -0.06 -28.07 14 20 H 0.28 15.17 8.31 -92.71 -0.77 14.40 14 21 H 0.17 3.78 8.06 -2.91 -0.02 3.75 14 22 H 0.23 2.09 8.06 -2.91 -0.02 2.07 14 23 H 0.19 4.75 8.06 -2.92 -0.02 4.72 14 Total: -1.00 -74.04 223.80 4.22 -69.82 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.26 Total: 0.00 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: 4.41 Total: 29.39 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -3.36 Total: -89.27 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.12 Total: -55.26 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -74.04 4.22 -69.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906480.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.168 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds