Wall clock time and date at job start Mon Mar 30 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48502 * 109.46948 * 274.97698 * 3 2 1 5 5 H 1.48498 * 109.47452 * 34.98043 * 3 2 1 6 6 H 1.48500 * 109.46864 * 154.98334 * 3 2 1 7 7 C 1.40234 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00410 * 186.03663 * 7 2 1 9 9 C 1.39999 * 119.99675 * 6.03622 * 7 2 1 10 10 N 1.32983 * 125.96385 * 354.23025 * 9 7 2 11 11 C 1.32763 * 109.22377 * 180.02562 * 10 9 7 12 12 C 1.36214 * 108.62018 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.40462 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46634 * 85.02423 * 13 12 11 15 15 C 1.34518 * 125.79031 * 90.00766 * 14 13 12 16 16 C 1.41379 * 106.84521 * 180.29521 * 15 14 13 17 17 C 1.34516 * 106.83634 * 359.56637 * 16 15 14 18 18 O 1.34301 * 125.79353 * 270.04124 * 14 13 12 19 19 N 1.36422 * 107.19726 * 0.24428 * 12 11 10 20 20 H 0.96990 * 126.55947 * 179.75744 * 19 12 11 21 21 H 0.97004 * 120.00408 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.68533 * 180.02562 * 11 10 9 23 23 H 1.09001 * 109.46891 * 325.02772 * 13 12 11 24 24 H 1.08994 * 109.47443 * 205.02385 * 13 12 11 25 25 H 1.08001 * 126.57511 * 0.02790 * 15 14 13 26 26 H 1.07995 * 126.58517 * 179.73603 * 16 15 14 27 27 H 1.08001 * 125.78958 * 180.11250 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4949 2.6201 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0081 -1.2144 0.0005 8 1 3.0836 -1.2170 0.0989 9 6 1.3140 -2.4235 -0.1264 10 7 -0.0080 -2.5668 -0.1462 11 6 -0.3063 -3.8537 -0.2791 12 6 0.8538 -4.5643 -0.3468 13 6 0.9799 -6.0584 -0.4985 14 6 0.9049 -6.4230 -1.9587 15 6 1.9493 -6.5138 -2.8016 16 6 1.4261 -6.8725 -4.0651 17 6 0.0943 -6.9888 -3.9166 18 8 -0.2162 -6.7118 -2.6396 19 7 1.8803 -3.6714 -0.2455 20 1 2.8281 -3.8769 -0.2577 21 1 -0.4851 0.8400 -0.0004 22 1 -1.3026 -4.2679 -0.3257 23 1 0.1688 -6.5480 0.0405 24 1 1.9364 -6.3855 -0.0910 25 1 2.9878 -6.3412 -2.5604 26 1 1.9881 -7.0265 -4.9743 27 1 -0.6071 -7.2544 -4.6937 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:41 Heat of formation + Delta-G solvation = 39.986858 kcal Electronic energy + Delta-G solvation = -13772.915324 eV Core-core repulsion = 11304.211560 eV Total energy + Delta-G solvation = -2468.703765 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.40428 -41.74290 -35.46706 -34.26510 -33.40834 -32.48162 -30.20615 -28.08859 -25.45551 -22.64442 -21.98658 -21.70241 -21.08828 -19.01769 -18.12211 -17.61049 -16.91541 -16.22598 -15.64610 -14.99307 -14.71721 -14.32074 -14.05893 -13.69124 -13.63956 -13.51315 -12.99738 -12.86341 -12.60823 -12.40637 -11.87692 -11.10685 -10.80049 -10.23367 -9.85694 -9.33085 -8.93830 -8.34563 -6.30259 0.85173 1.35635 1.44545 1.59847 1.68091 1.82397 2.27363 2.28036 2.74578 3.00907 3.62001 3.96311 4.17531 4.22087 4.42805 4.44086 4.59110 4.77008 4.96666 5.03706 5.14243 5.29017 5.37341 5.66619 5.75232 6.07087 6.29689 6.30888 6.65477 6.99171 7.50483 8.25000 8.62026 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.049406 B = 0.006716 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.591796 B = 4168.371153 C = 4274.355097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.344 3.656 10 N -0.561 5.561 11 C -0.042 4.042 12 C -0.116 4.116 13 C 0.062 3.938 14 C -0.011 4.011 15 C -0.231 4.231 16 C -0.227 4.227 17 C -0.055 4.055 18 O -0.194 6.194 19 N -0.606 5.606 20 H 0.410 0.590 21 H 0.276 0.724 22 H 0.142 0.858 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.152 0.848 26 H 0.169 0.831 27 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -10.029 -4.814 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.536 4.536 8 H 0.110 0.890 9 C 0.098 3.902 10 N -0.284 5.284 11 C -0.194 4.194 12 C -0.230 4.230 13 C 0.023 3.977 14 C -0.061 4.061 15 C -0.250 4.250 16 C -0.246 4.246 17 C -0.121 4.121 18 O -0.091 6.091 19 N -0.214 5.214 20 H 0.247 0.753 21 H 0.086 0.914 22 H 0.160 0.840 23 H 0.119 0.881 24 H 0.131 0.869 25 H 0.170 0.830 26 H 0.186 0.814 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.346 -9.352 -4.610 10.950 hybrid contribution 1.152 -0.007 -0.298 1.189 sum 4.498 -9.359 -4.908 11.485 Atomic orbital electron populations 1.70162 1.09064 1.28948 1.33699 1.26783 0.95554 1.04157 0.92265 0.85003 0.78885 0.75548 0.78917 1.19239 1.19692 1.17491 1.18596 0.94776 0.88529 1.51711 0.89017 1.20496 0.87988 0.85225 0.96537 1.71172 1.12165 1.16563 1.28528 1.22336 0.97222 0.91583 1.08298 1.20684 0.88530 0.92181 1.21614 1.18206 1.05146 0.87736 0.86569 1.22825 0.83812 1.03189 0.96310 1.21815 1.00264 1.09034 0.93897 1.22144 0.95146 1.07809 0.99469 1.24763 0.97871 1.05109 0.84374 1.84007 1.35324 1.67657 1.22076 1.43147 1.07988 1.06843 1.63431 0.75333 0.91370 0.84039 0.88054 0.86908 0.82991 0.81377 0.74809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.20 11.92 21.88 0.26 -45.94 15 2 C 0.03 1.69 5.49 85.35 0.47 2.16 15 3 Si 1.00 39.72 29.57 68.60 2.03 41.75 15 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 6 H -0.25 -9.36 7.11 99.48 0.71 -8.66 15 7 C -0.50 -27.47 9.45 23.18 0.22 -27.25 15 8 H 0.09 4.59 7.86 -2.91 -0.02 4.56 15 9 C 0.34 19.53 7.61 133.59 1.02 20.55 15 10 N -0.56 -34.00 9.43 -194.16 -1.83 -35.83 15 11 C -0.04 -2.20 11.77 84.08 0.99 -1.21 15 12 C -0.12 -5.12 6.49 41.37 0.27 -4.86 15 13 C 0.06 1.99 6.31 29.10 0.18 2.17 15 14 C -0.01 -0.37 6.56 24.83 0.16 -0.20 15 15 C -0.23 -7.03 10.81 22.19 0.24 -6.79 15 16 C -0.23 -6.04 10.91 22.19 0.24 -5.79 15 17 C -0.05 -1.43 12.09 66.97 0.81 -0.62 15 18 O -0.19 -6.46 10.65 -2.46 -0.03 -6.49 15 19 N -0.61 -28.05 6.26 -179.86 -1.13 -29.18 15 20 H 0.41 15.79 8.96 -92.72 -0.83 14.96 15 21 H 0.28 14.62 8.29 -92.71 -0.77 13.86 15 22 H 0.14 6.77 8.06 -2.91 -0.02 6.74 15 23 H 0.10 2.95 8.14 -2.39 -0.02 2.93 15 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.17 3.42 8.06 -2.91 -0.02 3.40 15 27 H 0.24 3.87 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -72.54 250.26 4.27 -68.27 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.37 Total: 29.26 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.60 Total: -21.84 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -2.69 Total: -110.95 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.03 Total: -6.49 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -72.54 4.27 -68.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.257 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds