Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47561 * 274.98843 * 3 2 1 5 5 H 1.48506 * 109.47212 * 34.99005 * 3 2 1 6 6 H 1.48504 * 109.47033 * 154.98642 * 3 2 1 7 7 C 1.40075 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99943 * 186.29349 * 7 2 1 9 9 C 1.40058 * 119.99944 * 6.29858 * 7 2 1 10 10 C 1.39616 * 127.06044 * 173.13478 * 9 7 2 11 11 N 1.33018 * 107.46692 * 180.02562 * 10 9 7 12 12 C 1.31021 * 109.97718 * 359.97438 * 11 10 9 13 13 C 1.50695 * 125.17378 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47388 * 305.02308 * 13 12 11 15 15 C 1.34511 * 125.78643 * 90.00245 * 14 13 12 16 16 C 1.41390 * 106.83915 * 179.97438 * 15 14 13 17 17 C 1.34514 * 106.84024 * 359.97438 * 16 15 14 18 18 O 1.34305 * 108.42149 * 0.26690 * 17 16 15 19 19 N 1.35072 * 109.64598 * 0.23198 * 12 11 10 20 20 H 0.96994 * 126.48470 * 179.74955 * 19 12 11 21 21 H 0.97001 * 119.99544 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.27011 * 0.05229 * 10 9 7 23 23 H 1.09008 * 109.46788 * 185.02637 * 13 12 11 24 24 H 1.08998 * 109.47513 * 65.02815 * 13 12 11 25 25 H 1.07997 * 126.58341 * 359.95064 * 15 14 13 26 26 H 1.08000 * 126.57951 * 179.97438 * 16 15 14 27 27 H 1.08001 * 125.79025 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3847 2.1074 -1.3948 5 1 1.4967 2.6200 0.8029 6 1 3.5889 1.4120 0.5920 7 6 2.0089 -1.2131 -0.0005 8 1 3.0840 -1.2160 0.1020 9 6 1.3149 -2.4223 -0.1342 10 6 1.8657 -3.6962 -0.2864 11 7 0.8573 -4.5588 -0.3777 12 6 -0.2850 -3.9227 -0.2937 13 6 -1.6450 -4.5686 -0.3573 14 6 -1.7573 -5.3798 -1.6223 15 6 -1.4258 -6.6765 -1.7572 16 6 -1.6901 -7.0292 -3.1007 17 6 -2.1678 -5.9271 -3.7061 18 8 -2.2011 -4.9297 -2.8073 19 7 -0.0581 -2.5992 -0.1472 20 1 -0.7299 -1.9045 -0.0652 21 1 -0.4849 0.8401 0.0004 22 1 2.9179 -3.9371 -0.3228 23 1 -2.4145 -3.7965 -0.3514 24 1 -1.7782 -5.2209 0.5057 25 1 -1.0328 -7.3238 -0.9872 26 1 -1.5377 -7.9976 -3.5538 27 1 -2.4686 -5.8551 -4.7409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279393.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = 47.510902 kcal Electronic energy + Delta-G solvation = -13841.608792 eV Core-core repulsion = 11373.231294 eV Total energy + Delta-G solvation = -2468.377498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.05224 -39.84820 -33.88511 -32.75472 -31.91150 -30.39762 -28.70574 -26.49465 -23.82666 -21.26976 -20.32532 -19.87494 -18.76881 -17.86408 -16.75080 -15.78347 -15.15062 -14.68617 -14.14271 -13.66531 -12.96042 -12.45739 -12.38188 -12.29358 -12.13769 -11.81317 -11.53906 -11.34351 -11.19647 -10.74820 -10.37018 -9.52278 -9.44276 -8.37553 -8.26035 -7.96766 -7.11322 -6.98978 -4.37310 2.21211 2.87879 3.02208 3.07392 3.09959 3.44465 3.72921 3.86072 4.44610 4.99390 5.23990 5.29527 5.45939 5.53489 5.67591 6.00458 6.13283 6.25682 6.42585 6.56876 6.88022 6.99546 7.13947 7.24399 7.63271 7.71740 7.83008 8.47088 8.65812 8.75557 9.45225 9.83258 10.10294 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.052047 B = 0.006954 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.847802 B = 4025.259756 C = 4219.388112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.066 3.934 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.202 3.798 10 C -0.180 4.180 11 N -0.463 5.463 12 C 0.068 3.932 13 C 0.067 3.933 14 C 0.021 3.979 15 C -0.204 4.204 16 C -0.213 4.213 17 C -0.060 4.060 18 O -0.178 6.178 19 N -0.560 5.560 20 H 0.421 0.579 21 H 0.286 0.714 22 H 0.141 0.859 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -4.099 -2.715 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.147 4.147 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.113 0.887 9 C 0.083 3.917 10 C -0.330 4.330 11 N -0.183 5.183 12 C -0.187 4.187 13 C 0.028 3.972 14 C -0.030 4.030 15 C -0.223 4.223 16 C -0.233 4.233 17 C -0.128 4.128 18 O -0.074 6.074 19 N -0.176 5.176 20 H 0.267 0.733 21 H 0.097 0.903 22 H 0.158 0.842 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.199 -4.589 -2.863 7.502 hybrid contribution 0.145 1.750 -0.081 1.758 sum -5.055 -2.839 -2.944 6.502 Atomic orbital electron populations 1.68953 1.07788 1.29877 1.41479 1.25950 0.94882 1.01871 0.92029 0.85902 0.80077 0.79466 0.78956 1.19554 1.20321 1.18465 1.18793 0.95356 0.88238 1.45125 0.88737 1.18959 0.81459 0.94948 0.96313 1.22145 0.96538 0.88890 1.25385 1.69166 0.97424 1.34891 1.16809 1.21582 0.94219 0.82402 1.20546 1.17966 0.92014 0.97032 0.90163 1.22405 1.00678 0.93773 0.86184 1.21439 1.07411 0.95900 0.97525 1.21752 1.06498 0.99827 0.95198 1.23831 1.07341 0.86508 0.95110 1.84011 1.66286 1.38460 1.18649 1.43503 1.08400 1.07342 1.58332 0.73310 0.90304 0.84188 0.90212 0.88307 0.83716 0.84078 0.78852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.05 10.83 55.56 0.60 -20.45 15 2 C 0.07 1.61 5.49 -17.28 -0.09 1.52 15 3 Si 0.93 18.57 29.57 -169.99 -5.03 13.54 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 7 C -0.44 -11.60 9.36 -38.21 -0.36 -11.96 15 8 H 0.09 2.36 7.86 -52.49 -0.41 1.95 15 9 C 0.20 5.54 6.74 -83.68 -0.56 4.97 15 10 C -0.18 -4.84 11.98 -16.52 -0.20 -5.04 15 11 N -0.46 -12.17 11.12 -9.77 -0.11 -12.28 15 12 C 0.07 1.65 7.38 -154.96 -1.14 0.51 15 13 C 0.07 1.29 6.38 -29.04 -0.19 1.11 15 14 C 0.02 0.40 6.51 -35.63 -0.23 0.16 15 15 C -0.20 -3.62 10.81 -39.70 -0.43 -4.05 15 16 C -0.21 -3.34 10.91 -39.70 -0.43 -3.77 15 17 C -0.06 -0.94 12.09 29.42 0.36 -0.58 15 18 O -0.18 -3.38 10.65 5.69 0.06 -3.32 15 19 N -0.56 -14.50 5.82 -7.86 -0.05 -14.54 15 20 H 0.42 10.60 6.49 -40.82 -0.26 10.34 15 21 H 0.29 6.46 8.30 -40.82 -0.34 6.13 15 22 H 0.14 3.49 8.06 -52.49 -0.42 3.07 15 23 H 0.08 1.38 8.14 -51.92 -0.42 0.95 15 24 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 25 H 0.15 2.41 8.06 -52.49 -0.42 1.98 15 26 H 0.14 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.19 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 248.10 15.07 3.74 3.74 Total: -1.00 -30.03 248.10 -6.41 -36.44 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -2.35 Total: 14.00 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.28 Total: -17.13 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.45 Total: -47.27 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.06 Total: -3.32 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.03 -6.41 -36.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279393.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.947 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds