Wall clock time and date at job start Mon Mar 30 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47561 * 274.98843 * 3 2 1 5 5 H 1.48506 * 109.47212 * 34.99005 * 3 2 1 6 6 H 1.48504 * 109.47033 * 154.98642 * 3 2 1 7 7 C 1.40075 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99943 * 186.29349 * 7 2 1 9 9 C 1.40058 * 119.99944 * 6.29858 * 7 2 1 10 10 C 1.39616 * 127.06044 * 173.13478 * 9 7 2 11 11 N 1.33018 * 107.46692 * 180.02562 * 10 9 7 12 12 C 1.31021 * 109.97718 * 359.97438 * 11 10 9 13 13 C 1.50695 * 125.17378 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47388 * 305.02308 * 13 12 11 15 15 C 1.34511 * 125.78643 * 90.00245 * 14 13 12 16 16 C 1.41390 * 106.83915 * 179.97438 * 15 14 13 17 17 C 1.34514 * 106.84024 * 359.97438 * 16 15 14 18 18 O 1.34305 * 108.42149 * 0.26690 * 17 16 15 19 19 N 1.35072 * 109.64598 * 0.23198 * 12 11 10 20 20 H 0.96994 * 126.48470 * 179.74955 * 19 12 11 21 21 H 0.97001 * 119.99544 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.27011 * 0.05229 * 10 9 7 23 23 H 1.09008 * 109.46788 * 185.02637 * 13 12 11 24 24 H 1.08998 * 109.47513 * 65.02815 * 13 12 11 25 25 H 1.07997 * 126.58341 * 359.95064 * 15 14 13 26 26 H 1.08000 * 126.57951 * 179.97438 * 16 15 14 27 27 H 1.08001 * 125.79025 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3847 2.1074 -1.3948 5 1 1.4967 2.6200 0.8029 6 1 3.5889 1.4120 0.5920 7 6 2.0089 -1.2131 -0.0005 8 1 3.0840 -1.2160 0.1020 9 6 1.3149 -2.4223 -0.1342 10 6 1.8657 -3.6962 -0.2864 11 7 0.8573 -4.5588 -0.3777 12 6 -0.2850 -3.9227 -0.2937 13 6 -1.6450 -4.5686 -0.3573 14 6 -1.7573 -5.3798 -1.6223 15 6 -1.4258 -6.6765 -1.7572 16 6 -1.6901 -7.0292 -3.1007 17 6 -2.1678 -5.9271 -3.7061 18 8 -2.2011 -4.9297 -2.8073 19 7 -0.0581 -2.5992 -0.1472 20 1 -0.7299 -1.9045 -0.0652 21 1 -0.4849 0.8401 0.0004 22 1 2.9179 -3.9371 -0.3228 23 1 -2.4145 -3.7965 -0.3514 24 1 -1.7782 -5.2209 0.5057 25 1 -1.0328 -7.3238 -0.9872 26 1 -1.5377 -7.9976 -3.5538 27 1 -2.4686 -5.8551 -4.7409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279393.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:42 Heat of formation + Delta-G solvation = 29.134702 kcal Electronic energy + Delta-G solvation = -13842.405644 eV Core-core repulsion = 11373.231294 eV Total energy + Delta-G solvation = -2469.174350 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.38390 -41.80570 -35.77274 -34.21439 -33.34893 -32.38334 -30.52489 -28.04629 -25.67577 -22.58202 -21.93113 -21.68140 -20.58726 -19.77793 -18.10520 -17.45492 -16.77663 -16.40086 -15.62589 -15.31612 -14.71838 -14.32180 -13.86469 -13.64641 -13.62253 -13.44483 -13.41976 -12.98386 -12.73268 -12.50822 -12.00042 -11.33911 -10.74279 -10.38524 -10.26627 -9.32837 -9.09618 -8.85382 -6.36234 0.87661 1.24199 1.40084 1.55024 1.77021 1.88376 2.18032 2.19805 2.55426 3.13012 3.28602 3.90811 4.04998 4.24260 4.27714 4.45837 4.66168 4.94726 5.00933 5.12370 5.21320 5.24917 5.32835 5.70639 5.74660 5.85197 6.32165 6.47960 6.67686 6.79399 7.48721 7.83868 8.25250 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.052047 B = 0.006954 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.847802 B = 4025.259756 C = 4219.388112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.028 3.972 3 Si 1.007 2.993 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.097 0.903 9 C 0.174 3.826 10 C -0.214 4.214 11 N -0.483 5.483 12 C 0.078 3.922 13 C 0.068 3.932 14 C -0.014 4.014 15 C -0.206 4.206 16 C -0.223 4.223 17 C -0.054 4.054 18 O -0.201 6.201 19 N -0.568 5.568 20 H 0.421 0.579 21 H 0.297 0.703 22 H 0.146 0.854 23 H 0.095 0.905 24 H 0.123 0.877 25 H 0.150 0.850 26 H 0.173 0.827 27 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 -3.675 -3.458 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.183 4.183 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.510 4.510 8 H 0.115 0.885 9 C 0.055 3.945 10 C -0.362 4.362 11 N -0.203 5.203 12 C -0.179 4.179 13 C 0.029 3.971 14 C -0.064 4.064 15 C -0.226 4.226 16 C -0.242 4.242 17 C -0.121 4.121 18 O -0.098 6.098 19 N -0.184 5.184 20 H 0.267 0.733 21 H 0.108 0.892 22 H 0.163 0.837 23 H 0.113 0.887 24 H 0.140 0.860 25 H 0.168 0.832 26 H 0.190 0.810 27 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.827 -4.187 -3.598 8.027 hybrid contribution 0.242 1.543 0.098 1.565 sum -5.585 -2.643 -3.500 7.101 Atomic orbital electron populations 1.68969 1.08958 1.31460 1.40341 1.26890 0.95776 1.05012 0.90651 0.84777 0.78763 0.74587 0.79114 1.19105 1.19066 1.18006 1.19088 0.95814 0.89089 1.47025 0.88522 1.19353 0.82356 0.95635 0.97121 1.22365 0.97231 0.89365 1.27241 1.69167 0.97922 1.35066 1.18114 1.22606 0.95869 0.81988 1.17476 1.18124 0.89411 0.97835 0.91692 1.22343 1.03243 0.94394 0.86466 1.21749 1.06297 0.95615 0.98907 1.22153 1.06332 1.01410 0.94264 1.24772 1.05551 0.85605 0.96169 1.83990 1.66794 1.39939 1.19102 1.43602 1.07985 1.08001 1.58783 0.73266 0.89197 0.83662 0.88681 0.85951 0.83174 0.80994 0.74662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.58 10.83 21.86 0.24 -42.34 15 2 C 0.03 1.36 5.49 85.28 0.47 1.82 15 3 Si 1.01 37.18 29.57 68.60 2.03 39.21 15 4 H -0.27 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 6 H -0.26 -9.22 7.11 99.48 0.71 -8.52 15 7 C -0.48 -25.51 9.36 23.16 0.22 -25.29 15 8 H 0.10 4.94 7.86 -2.91 -0.02 4.92 15 9 C 0.17 9.77 6.74 38.87 0.26 10.03 15 10 C -0.21 -11.90 11.98 84.85 1.02 -10.89 15 11 N -0.48 -25.79 11.12 -184.81 -2.05 -27.84 15 12 C 0.08 3.82 7.38 137.97 1.02 4.84 15 13 C 0.07 2.57 6.38 29.10 0.19 2.76 15 14 C -0.01 -0.53 6.51 24.83 0.16 -0.37 15 15 C -0.21 -7.07 10.81 22.19 0.24 -6.83 15 16 C -0.22 -6.40 10.91 22.19 0.24 -6.16 15 17 C -0.05 -1.54 12.09 66.97 0.81 -0.74 15 18 O -0.20 -7.40 10.65 -2.54 -0.03 -7.42 15 19 N -0.57 -29.85 5.82 -178.78 -1.04 -30.89 15 20 H 0.42 21.48 6.49 -92.71 -0.60 20.88 15 21 H 0.30 13.09 8.30 -92.71 -0.77 12.32 15 22 H 0.15 7.56 8.06 -2.91 -0.02 7.53 15 23 H 0.09 3.22 8.14 -2.38 -0.02 3.20 15 24 H 0.12 3.97 8.14 -2.39 -0.02 3.95 15 25 H 0.15 4.84 8.06 -2.91 -0.02 4.81 15 26 H 0.17 3.73 8.06 -2.91 -0.02 3.71 15 27 H 0.24 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -64.90 248.10 4.36 -60.54 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.59 Total: 39.56 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.62 Total: -30.82 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -2.86 Total: -101.07 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.03 Total: -7.42 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -64.90 4.36 -60.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279393.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.674 kcal (2) G-P(sol) polarization free energy of solvation -64.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds