Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48503 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.46973 * 299.99888 * 3 2 1 6 6 H 1.48504 * 109.47000 * 60.00063 * 3 2 1 7 7 C 1.37872 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00265 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46639 * 299.99861 * 9 7 2 11 11 O 1.42896 * 109.46775 * 59.99276 * 9 7 2 12 12 C 1.50695 * 109.47362 * 179.97438 * 9 7 2 13 13 C 1.34229 * 126.56601 * 264.95685 * 12 9 7 14 14 N 1.36921 * 109.91050 * 180.02562 * 13 12 9 15 15 H 0.97004 * 124.98187 * 180.02562 * 14 13 12 16 16 C 1.37417 * 110.02680 * 0.02562 * 14 13 12 17 17 N 1.32655 * 133.19126 * 179.97438 * 16 14 13 18 18 C 1.31592 * 121.67033 * 179.70358 * 17 16 14 19 19 C 1.38658 * 121.58215 * 0.59764 * 18 17 16 20 20 C 1.38203 * 119.41218 * 359.41593 * 19 18 17 21 21 C 1.39698 * 118.03780 * 0.27603 * 20 19 18 22 22 H 0.96999 * 119.99931 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00132 * 60.01210 * 11 9 7 24 24 H 1.07994 * 125.04101 * 0.03721 * 13 12 9 25 25 H 1.07999 * 119.20358 * 180.29584 * 18 17 16 26 26 H 1.08002 * 120.29687 * 179.69561 * 19 18 17 27 27 H 1.08000 * 120.98205 * 180.29765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4298 -2.5750 -1.1664 12 6 2.2302 -3.6446 0.0005 13 6 2.6779 -4.3140 -1.0734 14 7 3.5561 -5.2890 -0.6824 15 1 4.0103 -5.9014 -1.2821 16 6 3.6995 -5.2727 0.6842 17 7 4.4174 -5.9994 1.5305 18 6 4.3870 -5.7800 2.8276 19 6 3.5931 -4.7850 3.3774 20 6 2.8225 -3.9946 2.5458 21 6 2.8748 -4.2410 1.1718 22 1 -0.4850 0.8400 -0.0004 23 1 0.9222 -2.5300 -1.9975 24 1 2.3884 -4.1132 -2.0942 25 1 4.9914 -6.3927 3.4800 26 1 3.5804 -4.6261 4.4456 27 1 2.1986 -3.2093 2.9464 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 18.553087 kcal Electronic energy + Delta-G solvation = -14065.490465 eV Core-core repulsion = 11595.857262 eV Total energy + Delta-G solvation = -2469.633203 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.97109 -37.42067 -35.54342 -32.38606 -32.16106 -29.79818 -28.75985 -26.49324 -23.20243 -22.86595 -22.04132 -18.77367 -17.81708 -16.94282 -16.20787 -15.55459 -14.61435 -14.49400 -14.38885 -14.12148 -13.04269 -12.74935 -12.72585 -12.30808 -11.85062 -11.33442 -11.23538 -10.97586 -10.93516 -10.22989 -9.78814 -9.42408 -8.93580 -8.63774 -8.34312 -7.96889 -7.24078 -6.01968 -4.20860 1.49715 1.82491 3.25454 3.26547 3.31570 3.35632 3.42125 4.34146 4.42118 4.92822 5.20717 5.26463 5.33853 5.47926 5.62134 5.88920 6.11058 6.18678 6.42987 6.49466 6.76544 7.00090 7.07673 7.47804 7.67612 7.80775 7.88658 8.14495 8.43456 8.82629 9.31055 9.55160 11.00609 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034758 B = 0.009095 C = 0.008136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.372862 B = 3077.843526 C = 3440.594333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.288 3.712 10 H 0.066 0.934 11 O -0.560 6.560 12 C -0.133 4.133 13 C 0.027 3.973 14 N -0.587 5.587 15 H 0.411 0.589 16 C 0.278 3.722 17 N -0.511 5.511 18 C 0.126 3.874 19 C -0.219 4.219 20 C -0.014 4.014 21 C -0.139 4.139 22 H 0.261 0.739 23 H 0.344 0.656 24 H 0.172 0.828 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -8.075 1.773 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.596 4.596 8 H 0.075 0.925 9 C 0.230 3.770 10 H 0.084 0.916 11 O -0.362 6.362 12 C -0.140 4.140 13 C -0.096 4.096 14 N -0.194 5.194 15 H 0.248 0.752 16 C 0.045 3.955 17 N -0.225 5.225 18 C -0.040 4.040 19 C -0.241 4.241 20 C -0.040 4.040 21 C -0.147 4.147 22 H 0.070 0.930 23 H 0.188 0.812 24 H 0.189 0.811 25 H 0.169 0.831 26 H 0.148 0.852 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.900 -8.716 1.710 10.663 hybrid contribution 0.751 1.373 -0.306 1.595 sum 6.651 -7.342 1.404 10.006 Atomic orbital electron populations 1.70081 1.05888 1.26439 1.47221 1.25044 0.94697 0.99071 0.93877 0.86603 0.80277 0.83744 0.77729 1.19723 1.20857 1.20824 1.21585 0.93235 0.90522 1.54278 0.92492 1.17880 0.85937 0.86876 0.86291 0.91616 1.86619 1.37965 1.96302 1.15324 1.22010 1.02186 1.00049 0.89752 1.21451 0.95925 0.92492 0.99695 1.41410 1.41389 1.32669 1.03914 0.75222 1.18428 0.96748 0.95007 0.85347 1.66405 1.23491 1.28824 1.03767 1.22250 0.96671 0.95862 0.89195 1.21734 1.01893 0.99862 1.00572 1.21091 0.95282 0.96429 0.91226 1.19843 1.01582 0.98903 0.94348 0.92951 0.81204 0.81106 0.83058 0.85177 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 12.84 55.43 0.71 -24.12 15 2 C 0.08 2.16 5.40 -17.82 -0.10 2.07 15 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.56 -15.07 8.75 -34.44 -0.30 -15.37 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.29 7.23 3.35 -29.03 -0.10 7.13 15 10 H 0.07 1.81 8.14 -51.93 -0.42 1.39 15 11 O -0.56 -13.91 12.52 -35.23 -0.44 -14.35 15 12 C -0.13 -2.87 5.39 -102.76 -0.55 -3.42 15 13 C 0.03 0.49 11.16 -16.69 -0.19 0.30 15 14 N -0.59 -9.68 6.05 -12.15 -0.07 -9.75 15 15 H 0.41 5.30 8.96 -40.82 -0.37 4.93 15 16 C 0.28 5.28 8.43 -155.69 -1.31 3.97 15 17 N -0.51 -9.05 10.39 -12.27 -0.13 -9.18 15 18 C 0.13 1.89 11.14 -17.50 -0.20 1.70 15 19 C -0.22 -3.29 10.10 -39.44 -0.40 -3.69 15 20 C -0.01 -0.26 10.22 -39.05 -0.40 -0.66 15 21 C -0.14 -2.86 6.37 -105.11 -0.67 -3.52 15 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.34 7.31 8.09 45.56 0.37 7.68 15 24 H 0.17 2.52 7.40 -52.49 -0.39 2.13 15 25 H 0.15 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.13 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.14 2.42 8.06 -52.49 -0.42 2.00 15 LS Contribution 245.78 15.07 3.70 3.70 Total: -1.00 -32.18 245.78 -7.07 -39.25 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -1.62 Total: 10.04 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -4.21 Total: -11.50 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.51 Total: -43.05 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.44 Total: -14.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.18 -7.07 -39.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.807 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds