Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34073 * 125.79774 * 2 1 4 4 C 1.34173 * 110.78986 * 180.16740 * 3 2 1 5 5 C 1.34302 * 109.07390 * 359.58432 * 4 3 2 6 6 C 1.36129 * 125.79797 * 179.71287 * 2 1 3 7 7 C 1.47819 * 127.14978 * 359.97438 * 6 2 1 8 8 C 1.35498 * 125.29619 * 129.71823 * 7 6 2 9 9 C 1.46920 * 105.99354 * 179.90100 * 8 7 6 10 10 C 1.41441 * 127.29132 * 180.11894 * 9 8 7 11 11 H 1.07998 * 119.99789 * 173.32190 * 10 9 8 12 12 C 1.39560 * 120.00206 * 353.31510 * 10 9 8 13 13 N 1.31099 * 119.99596 * 6.49157 * 12 10 9 14 14 Si 1.86799 * 119.99865 * 186.48804 * 12 10 9 15 15 H 1.48505 * 109.47264 * 94.98990 * 14 12 10 16 16 H 1.48495 * 109.46915 * 214.98751 * 14 12 10 17 17 H 1.48501 * 109.47416 * 334.98939 * 14 12 10 18 18 C 1.39209 * 105.41359 * 0.35431 * 9 8 7 19 19 O 1.33880 * 108.15653 * 359.78607 * 18 9 8 20 20 H 1.09005 * 109.47221 * 270.28667 * 1 2 3 21 21 H 1.09002 * 109.47187 * 30.28541 * 1 2 3 22 22 H 1.08998 * 109.47576 * 150.28299 * 1 2 3 23 23 H 1.08004 * 125.46229 * 179.84972 * 4 3 2 24 24 H 1.08005 * 126.98615 * 180.28085 * 5 4 3 25 25 H 1.08001 * 127.00690 * 0.02562 * 8 7 6 26 26 H 0.97001 * 119.99329 * 180.02562 * 13 12 10 27 27 H 1.07997 * 125.92332 * 179.78004 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2912 1.0875 0.0000 4 6 3.5872 0.7400 -0.0037 5 6 3.6825 -0.5996 0.0030 6 6 2.3033 -1.1041 0.0055 7 6 1.8698 -2.5173 0.0131 8 6 2.3155 -3.4775 -0.8326 9 6 1.6142 -4.7107 -0.4507 10 6 1.7458 -5.9893 -1.0410 11 1 1.2528 -6.8419 -0.5979 12 6 2.5127 -6.1491 -2.1960 13 7 3.2133 -5.1437 -2.6619 14 14 2.5408 -7.7955 -3.0780 15 1 1.5367 -7.7882 -4.1722 16 1 3.8921 -8.0287 -3.6479 17 1 2.2159 -8.8785 -2.1153 18 6 0.7886 -4.3530 0.6115 19 8 0.9666 -3.0491 0.8575 20 1 -0.3634 0.0051 1.0277 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8925 -0.5094 23 1 4.4202 1.4274 -0.0068 24 1 4.5891 -1.1866 0.0065 25 1 3.0404 -3.3607 -1.6247 26 1 3.7460 -5.2547 -3.4649 27 1 0.1202 -5.0129 1.1446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279610.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -5.945109 kcal Electronic energy + Delta-G solvation = -13881.928729 eV Core-core repulsion = 11378.940454 eV Total energy + Delta-G solvation = -2502.988275 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.32895 -42.13614 -35.83521 -34.50426 -32.80505 -32.42097 -30.14928 -27.61531 -26.86988 -23.28569 -22.08457 -21.58330 -20.35868 -18.96733 -17.91999 -17.09600 -16.88273 -16.39034 -16.20647 -15.51829 -14.61028 -14.19456 -14.01356 -13.82491 -13.69935 -13.68966 -13.14548 -13.00658 -12.71625 -12.55033 -11.81431 -11.77836 -11.40676 -10.78267 -9.90409 -9.58770 -8.73377 -8.51435 -6.31054 0.59461 1.13326 1.33698 1.38617 1.53585 1.72139 1.99943 2.20328 2.24918 2.75284 3.38779 3.77503 3.97820 4.25384 4.40238 4.63371 4.73570 4.78823 4.89676 4.92446 5.08123 5.20175 5.34623 5.47880 5.60269 5.81755 6.01348 6.16747 6.37693 6.84927 6.92946 7.08986 8.47438 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.044922 B = 0.007592 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.155813 B = 3687.290104 C = 4051.169631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.003 3.997 3 O -0.179 6.179 4 C -0.016 4.016 5 C -0.220 4.220 6 C -0.140 4.140 7 C 0.011 3.989 8 C -0.212 4.212 9 C -0.012 4.012 10 C -0.484 4.484 11 H 0.077 0.923 12 C 0.024 3.976 13 N -0.851 5.851 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.269 1.269 17 H -0.258 1.258 18 C -0.245 4.245 19 O -0.199 6.199 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.258 0.742 24 H 0.153 0.847 25 H 0.145 0.855 26 H 0.281 0.719 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 9.080 1.613 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.047 4.047 3 O -0.076 6.076 4 C -0.082 4.082 5 C -0.239 4.239 6 C -0.142 4.142 7 C -0.038 4.038 8 C -0.233 4.233 9 C -0.015 4.015 10 C -0.515 4.515 11 H 0.095 0.905 12 C -0.186 4.186 13 N -0.480 5.480 14 Si 0.815 3.185 15 H -0.189 1.189 16 H -0.193 1.193 17 H -0.182 1.182 18 C -0.310 4.310 19 O -0.100 6.100 20 H 0.113 0.887 21 H 0.123 0.877 22 H 0.089 0.911 23 H 0.273 0.727 24 H 0.170 0.830 25 H 0.163 0.837 26 H 0.092 0.908 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.295 9.577 1.661 9.725 hybrid contribution 0.431 -1.358 -0.511 1.513 sum 0.135 8.220 1.150 8.301 Atomic orbital electron populations 1.20358 0.82972 1.04371 1.04563 1.22982 0.94912 0.83030 1.03778 1.83792 1.17502 1.34015 1.72320 1.24606 0.84073 0.95543 1.03951 1.22985 0.95917 0.95668 1.09356 1.19233 0.94506 0.88432 1.12000 1.19554 0.96825 0.92285 0.95107 1.23378 1.05152 0.92218 1.02510 1.19794 0.93633 0.94396 0.93627 1.19101 1.29015 0.93630 1.09743 0.90509 1.26769 0.92325 1.02352 0.97183 1.69901 1.23416 1.33688 1.21019 0.85007 0.78496 0.76698 0.78274 1.18926 1.19326 1.18154 1.24172 1.14662 0.82298 1.09915 1.83434 1.51632 1.24035 1.50896 0.88686 0.87713 0.91056 0.72670 0.82954 0.83717 0.90837 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 10.23 71.24 0.73 -1.18 15 2 C 0.00 0.11 7.37 25.20 0.19 0.30 15 3 O -0.18 -5.42 10.55 0.97 0.01 -5.40 15 4 C -0.02 -0.43 12.04 66.92 0.81 0.37 15 5 C -0.22 -7.79 11.15 23.63 0.26 -7.53 15 6 C -0.14 -6.00 6.20 -18.98 -0.12 -6.11 15 7 C 0.01 0.59 6.67 24.17 0.16 0.75 15 8 C -0.21 -12.20 9.83 23.91 0.23 -11.96 15 9 C -0.01 -0.71 6.10 -19.98 -0.12 -0.83 15 10 C -0.48 -27.89 9.40 23.38 0.22 -27.67 15 11 H 0.08 4.19 7.85 -2.91 -0.02 4.17 15 12 C 0.02 1.30 5.48 85.12 0.47 1.76 15 13 N -0.85 -47.39 10.50 21.77 0.23 -47.16 15 14 Si 0.99 40.54 29.56 68.60 2.03 42.56 15 15 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 16 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 17 H -0.26 -10.13 7.11 99.48 0.71 -9.43 15 18 C -0.25 -13.02 12.21 68.05 0.83 -12.19 15 19 O -0.20 -10.36 10.54 -1.34 -0.01 -10.37 15 20 H 0.09 2.43 8.14 -2.38 -0.02 2.41 15 21 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.07 2.35 7.93 -2.39 -0.02 2.33 15 23 H 0.26 3.63 8.06 -2.91 -0.02 3.60 15 24 H 0.15 5.19 8.06 -2.91 -0.02 5.16 15 25 H 0.15 8.67 6.10 -2.91 -0.02 8.66 15 26 H 0.28 14.19 8.30 -92.71 -0.77 13.42 15 27 H 0.20 9.09 8.06 -2.91 -0.02 9.07 15 Total: -1.00 -69.47 249.79 7.09 -62.37 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.18 Total: 22.29 kcal Atomic # 6 Polarization: -67.95 SS G_CDS: 3.66 Total: -64.29 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.23 Total: -47.16 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.00 Total: -15.78 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -69.47 7.09 -62.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279610.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.430 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds