Wall clock time and date at job start Mon Mar 30 2020 02:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86795 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47460 * 269.99922 * 3 2 1 5 5 H 1.48507 * 109.47254 * 30.00336 * 3 2 1 6 6 H 1.48505 * 109.47031 * 150.00213 * 3 2 1 7 7 C 1.39945 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.41791 * 120.00361 * 359.97438 * 7 2 1 10 10 N 1.31913 * 126.44586 * 359.97438 * 9 7 2 11 11 O 1.21277 * 110.08654 * 180.02562 * 10 9 7 12 12 C 1.34295 * 110.10389 * 359.97438 * 11 10 9 13 13 C 1.48013 * 126.42107 * 180.02562 * 12 11 10 14 14 C 1.39806 * 120.18498 * 359.75316 * 13 12 11 15 15 C 1.38722 * 117.88481 * 180.29325 * 14 13 12 16 16 C 1.38651 * 118.07671 * 359.96276 * 15 14 13 17 17 N 1.32078 * 120.08675 * 0.03405 * 16 15 14 18 18 N 1.28347 * 122.31100 * 359.97438 * 17 16 15 19 19 N 1.31641 * 107.16460 * 0.26974 * 12 11 10 20 20 H 0.96995 * 119.99871 * 359.97438 * 1 2 3 21 21 H 1.07998 * 121.05729 * 0.24953 * 14 13 12 22 22 H 1.08005 * 120.96043 * 180.02562 * 15 14 13 23 23 H 1.08007 * 119.95785 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0465 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5392 1.4401 0.7000 7 6 2.0073 -1.2120 -0.0005 8 1 3.0873 -1.2120 -0.0001 9 6 1.2984 -2.4399 -0.0005 10 7 -0.0124 -2.5881 0.0004 11 8 -0.2984 -3.7666 0.0006 12 6 0.8183 -4.5126 -0.0008 13 6 0.8874 -5.9911 -0.0015 14 6 -0.2869 -6.7497 0.0044 15 6 -0.1665 -8.1317 0.0096 16 6 1.1088 -8.6757 0.0079 17 7 2.1662 -7.8842 0.0021 18 7 2.0654 -6.6047 -0.0026 19 7 1.8400 -3.6825 0.0041 20 1 -0.4850 0.8400 0.0004 21 1 -1.2569 -6.2750 0.0055 22 1 -1.0410 -8.7656 0.0139 23 1 1.2379 -9.7480 0.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279672.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:23 Heat of formation + Delta-G solvation = 94.090734 kcal Electronic energy + Delta-G solvation = -13468.291473 eV Core-core repulsion = 10898.393485 eV Total energy + Delta-G solvation = -2569.897988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.054 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.45071 -41.91996 -36.63945 -35.47668 -34.47568 -33.94885 -31.59970 -28.76710 -26.33554 -25.66356 -23.81575 -23.04170 -19.95224 -18.45959 -18.38971 -18.15438 -17.64931 -17.00479 -16.37329 -15.95243 -15.05154 -14.70392 -14.12101 -13.36668 -13.18896 -13.15753 -12.51887 -12.49903 -12.21620 -11.97250 -11.90610 -11.32349 -11.25759 -10.99214 -10.73189 -10.07239 -8.70880 -6.87671 -0.59305 -0.19137 1.01018 1.34613 1.37252 1.55042 1.81224 1.96346 2.18483 2.58972 3.10142 3.14336 3.48993 3.51022 3.77759 4.04424 4.18678 4.34823 4.65754 4.86214 4.98462 5.15065 5.24886 5.55966 6.10624 6.30325 6.67907 7.59521 8.14670 8.33121 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.082577 B = 0.006613 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.995124 B = 4233.257656 C = 4562.405956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.023 3.977 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.095 0.905 9 C 0.261 3.739 10 N -0.446 5.446 11 O 0.038 5.962 12 C 0.168 3.832 13 C 0.135 3.865 14 C -0.094 4.094 15 C -0.081 4.081 16 C 0.050 3.950 17 N -0.273 5.273 18 N -0.246 5.246 19 N -0.508 5.508 20 H 0.290 0.710 21 H 0.179 0.821 22 H 0.218 0.782 23 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -13.222 0.021 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.194 4.194 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.178 1.178 7 C -0.507 4.507 8 H 0.113 0.887 9 C 0.010 3.990 10 N -0.173 5.173 11 O -0.005 6.005 12 C -0.053 4.053 13 C -0.010 4.010 14 C -0.124 4.124 15 C -0.110 4.110 16 C -0.114 4.114 17 N -0.114 5.114 18 N -0.091 5.091 19 N -0.250 5.250 20 H 0.100 0.900 21 H 0.197 0.803 22 H 0.234 0.766 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.751 -12.292 0.027 12.596 hybrid contribution -1.143 0.673 -0.009 1.326 sum -3.894 -11.619 0.019 12.255 Atomic orbital electron populations 1.69939 1.09069 1.30768 1.33962 1.27019 0.95976 1.04970 0.91473 0.84762 0.78514 0.73864 0.79797 1.18202 1.18558 1.17802 1.18915 0.94821 0.87137 1.49800 0.88688 1.22802 0.86398 0.92849 0.96971 1.75486 1.16246 0.91277 1.34291 1.85247 1.33661 1.13012 1.68576 1.25899 0.83390 0.94500 1.01542 1.19480 0.93833 0.86686 1.01026 1.22787 0.98931 0.95915 0.94734 1.23014 1.01080 0.93610 0.93281 1.25356 0.89598 1.04381 0.92099 1.73165 1.30797 0.96863 1.10590 1.73283 1.22973 1.04395 1.08483 1.72292 1.29795 1.00525 1.22346 0.89980 0.80330 0.76557 0.75633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.14 11.97 21.82 0.26 -45.88 14 2 C 0.02 1.27 5.49 85.27 0.47 1.74 14 3 Si 1.01 40.30 29.56 68.60 2.03 42.33 14 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 6 H -0.25 -9.80 7.11 99.48 0.71 -9.09 14 7 C -0.47 -27.86 9.52 23.56 0.22 -27.63 14 8 H 0.10 5.44 7.85 -2.91 -0.02 5.42 14 9 C 0.26 16.10 7.67 135.01 1.04 17.14 14 10 N -0.45 -26.96 10.46 -59.83 -0.63 -27.58 14 11 O 0.04 1.99 11.14 68.75 0.77 2.75 14 12 C 0.17 8.31 8.10 87.37 0.71 9.02 14 13 C 0.14 5.15 6.83 41.97 0.29 5.44 14 14 C -0.09 -2.29 9.88 22.77 0.22 -2.06 14 15 C -0.08 -1.15 10.20 22.48 0.23 -0.92 14 16 C 0.05 0.87 11.31 84.75 0.96 1.83 14 17 N -0.27 -8.43 11.50 -57.15 -0.66 -9.09 14 18 N -0.25 -9.80 11.46 -48.52 -0.56 -10.36 14 19 N -0.51 -29.40 11.60 -305.37 -3.54 -32.94 14 20 H 0.29 14.73 8.29 -92.71 -0.77 13.96 14 21 H 0.18 3.57 7.99 -2.91 -0.02 3.54 14 22 H 0.22 0.48 8.06 -2.91 -0.02 0.46 14 23 H 0.23 1.44 8.06 -2.91 -0.02 1.42 14 Total: -1.00 -81.60 228.27 3.07 -78.54 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 1.26 Total: -2.30 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.14 Total: 4.54 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -5.12 Total: -125.86 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.77 Total: 2.75 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -81.60 3.07 -78.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279672.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.628 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds