Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47229 * 85.01329 * 3 2 1 5 5 H 1.48503 * 109.47136 * 205.01273 * 3 2 1 6 6 H 1.48504 * 109.46824 * 325.01345 * 3 2 1 7 7 C 1.40121 * 119.99997 * 179.71972 * 2 1 3 8 8 H 1.08002 * 119.99803 * 187.02803 * 7 2 1 9 9 C 1.41553 * 119.99847 * 7.03101 * 7 2 1 10 10 C 1.40932 * 120.65862 * 186.97793 * 9 7 2 11 11 C 1.38289 * 118.15234 * 179.97438 * 10 9 7 12 12 N 1.32457 * 119.25036 * 0.02562 * 11 10 9 13 13 C 1.32018 * 121.29794 * 359.97438 * 12 11 10 14 14 C 1.50696 * 118.98096 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47308 * 14.99801 * 14 13 12 16 16 F 1.39898 * 109.47251 * 134.99752 * 14 13 12 17 17 F 1.39900 * 109.47531 * 255.00052 * 14 13 12 18 18 N 1.31403 * 122.04171 * 359.73446 * 13 12 11 19 19 H 0.97007 * 119.99664 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.92673 * 0.02562 * 10 9 7 21 21 H 1.08000 * 120.37377 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1073 1.3947 5 1 3.5870 1.4120 -0.5920 6 1 1.4948 2.6199 -0.8028 7 6 2.0073 -1.2135 0.0059 8 1 3.0812 -1.2164 0.1204 9 6 1.3075 -2.4354 -0.1381 10 6 1.9747 -3.6677 0.0115 11 6 1.2406 -4.8299 -0.1397 12 7 -0.0518 -4.7474 -0.4178 13 6 -0.6511 -3.5788 -0.5525 14 6 -2.1240 -3.5459 -0.8697 15 9 -2.6801 -4.8078 -0.6341 16 9 -2.7552 -2.5988 -0.0562 17 9 -2.3041 -3.2005 -2.2134 18 7 -0.0042 -2.4435 -0.4141 19 1 -0.4850 0.8401 -0.0004 20 1 3.0299 -3.7035 0.2388 21 1 1.7159 -5.7938 -0.0331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279701.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -114.203773 kcal Electronic energy + Delta-G solvation = -14534.330353 eV Core-core repulsion = 11381.250546 eV Total energy + Delta-G solvation = -3153.079807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.28462 -46.83388 -46.76099 -39.18446 -34.31748 -31.71387 -31.30428 -26.81062 -25.90708 -22.49338 -21.52514 -18.42959 -17.73529 -17.69051 -16.90874 -15.64116 -15.00613 -14.31225 -13.78299 -13.60095 -13.53999 -13.23920 -13.13097 -12.96649 -12.92522 -12.80248 -11.65634 -11.52341 -11.32429 -10.96920 -10.45740 -9.96226 -9.40883 -8.98336 -8.47587 -7.79760 -6.78841 -5.01462 2.13769 2.61664 2.94394 2.98272 3.02952 3.37554 3.72475 4.37807 4.40481 4.86310 5.08994 5.61360 5.72213 6.20411 6.37993 6.47968 6.83505 6.87579 7.43443 7.76061 8.17638 8.43739 8.64824 9.59606 9.95237 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.011383 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.938915 B = 2459.152341 C = 3044.032648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.272 1.272 7 C -0.405 4.405 8 H 0.096 0.904 9 C 0.262 3.738 10 C -0.303 4.303 11 C 0.137 3.863 12 N -0.596 5.596 13 C 0.236 3.764 14 C 0.546 3.454 15 F -0.174 7.174 16 F -0.167 7.167 17 F -0.179 7.179 18 N -0.480 5.480 19 H 0.284 0.716 20 H 0.117 0.883 21 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -0.775 -0.313 0.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.164 4.164 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.196 1.196 7 C -0.438 4.438 8 H 0.114 0.886 9 C 0.136 3.864 10 C -0.331 4.331 11 C -0.020 4.020 12 N -0.321 5.321 13 C -0.039 4.039 14 C 0.489 3.511 15 F -0.155 7.155 16 F -0.149 7.149 17 F -0.161 7.161 18 N -0.201 5.201 19 H 0.095 0.905 20 H 0.135 0.865 21 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.931 -0.607 -0.502 1.219 hybrid contribution 1.076 0.666 0.165 1.276 sum 0.145 0.059 -0.338 0.372 Atomic orbital electron populations 1.69986 1.07558 1.29322 1.25076 1.26214 0.95038 1.01798 0.93339 0.86135 0.80524 0.79917 0.79372 1.19134 1.18142 1.19642 1.19779 0.95260 0.88957 1.39825 0.88612 1.18685 0.86961 0.92666 0.88127 1.22518 1.01198 0.94693 1.14679 1.22267 0.89016 0.97483 0.93219 1.67680 1.12113 1.27533 1.24786 1.22025 0.93791 0.88101 0.99952 1.17472 0.86387 0.73117 0.74128 1.93148 1.86893 1.41259 1.94213 1.93192 1.83705 1.65138 1.72826 1.93153 1.96056 1.92184 1.34696 1.68864 1.09611 1.25228 1.16397 0.90488 0.86465 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.77 11.62 55.55 0.65 -17.12 14 2 C 0.06 1.54 5.48 -17.34 -0.09 1.45 14 3 Si 0.92 17.21 29.57 -169.99 -5.03 12.18 14 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.26 -4.72 7.11 56.52 0.40 -4.32 14 6 H -0.27 -5.05 7.11 56.52 0.40 -4.65 14 7 C -0.41 -10.05 9.19 -37.61 -0.35 -10.40 14 8 H 0.10 2.15 7.86 -52.49 -0.41 1.74 14 9 C 0.26 6.88 6.55 -84.62 -0.55 6.33 14 10 C -0.30 -6.97 9.95 -38.54 -0.38 -7.35 14 11 C 0.14 3.02 11.29 -17.26 -0.19 2.82 14 12 N -0.60 -14.58 9.81 -10.81 -0.11 -14.69 14 13 C 0.24 6.06 7.09 -157.34 -1.12 4.95 14 14 C 0.55 12.60 3.49 36.00 0.13 12.73 14 15 F -0.17 -3.73 16.87 2.25 0.04 -3.69 14 16 F -0.17 -3.88 17.19 2.25 0.04 -3.84 14 17 F -0.18 -4.01 17.30 2.25 0.04 -3.98 14 18 N -0.48 -13.15 7.91 -8.68 -0.07 -13.22 14 19 H 0.28 6.48 8.29 -40.82 -0.34 6.14 14 20 H 0.12 2.34 8.06 -52.49 -0.42 1.92 14 21 H 0.14 2.47 8.06 -52.49 -0.42 2.05 14 LS Contribution 216.89 15.07 3.27 3.27 Total: -1.00 -28.06 216.89 -4.13 -32.18 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -0.39 Total: -1.62 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -2.56 Total: 10.53 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.47 Total: -45.03 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 0.12 Total: -11.50 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.06 -4.13 -32.18 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279701.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.022 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds