Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47229 * 85.01329 * 3 2 1 5 5 H 1.48503 * 109.47136 * 205.01273 * 3 2 1 6 6 H 1.48504 * 109.46824 * 325.01345 * 3 2 1 7 7 C 1.40121 * 119.99997 * 179.71972 * 2 1 3 8 8 H 1.08002 * 119.99803 * 187.02803 * 7 2 1 9 9 C 1.41553 * 119.99847 * 7.03101 * 7 2 1 10 10 C 1.40932 * 120.65862 * 186.97793 * 9 7 2 11 11 C 1.38289 * 118.15234 * 179.97438 * 10 9 7 12 12 N 1.32457 * 119.25036 * 0.02562 * 11 10 9 13 13 C 1.32018 * 121.29794 * 359.97438 * 12 11 10 14 14 C 1.50696 * 118.98096 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.47308 * 14.99801 * 14 13 12 16 16 F 1.39898 * 109.47251 * 134.99752 * 14 13 12 17 17 F 1.39900 * 109.47531 * 255.00052 * 14 13 12 18 18 N 1.31403 * 122.04171 * 359.73446 * 13 12 11 19 19 H 0.97007 * 119.99664 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.92673 * 0.02562 * 10 9 7 21 21 H 1.08000 * 120.37377 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1073 1.3947 5 1 3.5870 1.4120 -0.5920 6 1 1.4948 2.6199 -0.8028 7 6 2.0073 -1.2135 0.0059 8 1 3.0812 -1.2164 0.1204 9 6 1.3075 -2.4354 -0.1381 10 6 1.9747 -3.6677 0.0115 11 6 1.2406 -4.8299 -0.1397 12 7 -0.0518 -4.7474 -0.4178 13 6 -0.6511 -3.5788 -0.5525 14 6 -2.1240 -3.5459 -0.8697 15 9 -2.6801 -4.8078 -0.6341 16 9 -2.7552 -2.5988 -0.0562 17 9 -2.3041 -3.2005 -2.2134 18 7 -0.0042 -2.4435 -0.4141 19 1 -0.4850 0.8401 -0.0004 20 1 3.0299 -3.7035 0.2388 21 1 1.7159 -5.7938 -0.0331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279701.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -131.101777 kcal Electronic energy + Delta-G solvation = -14535.063106 eV Core-core repulsion = 11381.250546 eV Total energy + Delta-G solvation = -3153.812560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -51.10291 -48.64029 -48.58110 -41.03223 -36.12722 -33.57466 -33.13903 -28.67357 -27.73691 -24.31482 -23.37754 -20.24453 -19.55328 -19.52133 -18.75500 -17.42916 -16.76733 -16.01525 -15.61412 -15.39457 -15.29616 -15.05197 -15.00183 -14.78219 -14.73896 -14.43935 -13.47829 -13.13642 -12.92847 -12.77683 -11.99135 -11.68746 -11.25024 -10.83656 -10.31159 -9.67413 -8.57060 -6.89112 0.27708 0.83952 1.41563 1.52035 1.54081 1.58667 2.16136 2.55466 2.60688 3.05443 3.25674 3.74055 4.03826 4.43742 4.55066 4.76761 5.05651 5.08185 5.66128 5.92982 6.35797 6.57781 6.81598 7.72074 8.21496 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.011383 C = 0.009196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.938915 B = 2459.152341 C = 3044.032648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.248 1.248 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.114 0.886 9 C 0.223 3.777 10 C -0.305 4.305 11 C 0.133 3.867 12 N -0.605 5.605 13 C 0.215 3.785 14 C 0.551 3.449 15 F -0.163 7.163 16 F -0.170 7.170 17 F -0.177 7.177 18 N -0.512 5.512 19 H 0.290 0.710 20 H 0.146 0.854 21 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -0.552 -0.176 1.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.204 4.204 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.171 1.171 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.132 0.868 9 C 0.097 3.903 10 C -0.332 4.332 11 C -0.022 4.022 12 N -0.331 5.331 13 C -0.060 4.060 14 C 0.494 3.506 15 F -0.145 7.145 16 F -0.152 7.152 17 F -0.158 7.158 18 N -0.234 5.234 19 H 0.101 0.899 20 H 0.164 0.836 21 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.408 -0.417 -0.363 0.687 hybrid contribution 0.674 0.518 0.132 0.860 sum 1.082 0.101 -0.230 1.110 Atomic orbital electron populations 1.70082 1.09509 1.30720 1.26022 1.27246 0.95706 1.05415 0.92035 0.84930 0.79129 0.74568 0.79590 1.18338 1.17054 1.19502 1.20283 0.96296 0.89413 1.39923 0.86807 1.19299 0.87270 0.94640 0.89123 1.22823 1.02599 0.93896 1.13879 1.23010 0.88246 0.99273 0.91693 1.67780 1.13362 1.26889 1.25021 1.22419 0.94804 0.88381 1.00389 1.17279 0.85716 0.73414 0.74172 1.93161 1.86622 1.40517 1.94165 1.93180 1.83641 1.65374 1.72970 1.93150 1.95988 1.92217 1.34467 1.68843 1.10638 1.26174 1.17749 0.89924 0.83599 0.79672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.07 11.62 21.85 0.25 -37.81 14 2 C 0.02 0.98 5.48 85.32 0.47 1.45 14 3 Si 1.00 34.37 29.57 68.60 2.03 36.40 14 4 H -0.26 -8.54 7.11 99.48 0.71 -7.83 14 5 H -0.25 -8.02 7.11 99.48 0.71 -7.31 14 6 H -0.27 -9.15 7.11 99.48 0.71 -8.44 14 7 C -0.43 -20.90 9.19 23.55 0.22 -20.69 14 8 H 0.11 4.94 7.86 -2.91 -0.02 4.92 14 9 C 0.22 11.66 6.55 40.28 0.26 11.92 14 10 C -0.31 -13.55 9.95 22.94 0.23 -13.32 14 11 C 0.13 5.61 11.29 84.61 0.96 6.56 14 12 N -0.61 -28.98 9.81 -188.13 -1.85 -30.82 14 13 C 0.21 11.03 7.09 138.80 0.98 12.02 14 14 C 0.55 25.47 3.49 71.23 0.25 25.72 14 15 F -0.16 -6.92 16.87 44.97 0.76 -6.16 14 16 F -0.17 -7.97 17.19 44.97 0.77 -7.19 14 17 F -0.18 -7.92 17.30 44.97 0.78 -7.14 14 18 N -0.51 -28.31 7.91 -181.38 -1.44 -29.75 14 19 H 0.29 13.38 8.29 -92.70 -0.77 12.61 14 20 H 0.15 5.45 8.06 -2.91 -0.02 5.43 14 21 H 0.19 5.88 8.06 -2.91 -0.02 5.86 14 Total: -1.00 -59.54 216.89 5.96 -53.59 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.28 Total: 5.23 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 3.36 Total: 23.66 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.03 Total: -98.38 kcal Atomic # 9 Polarization: -22.80 SS G_CDS: 2.31 Total: -20.49 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Total: -59.54 5.96 -53.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279701.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.516 kcal (2) G-P(sol) polarization free energy of solvation -59.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds