Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35887 * 116.99737 * 2 1 4 4 C 1.39115 * 119.74114 * 359.97438 * 3 2 1 5 5 C 1.37822 * 120.09946 * 179.97438 * 4 3 2 6 6 C 1.39100 * 119.72726 * 359.97438 * 5 4 3 7 7 C 1.47877 * 133.94708 * 180.02562 * 6 5 4 8 8 C 1.40945 * 127.31121 * 359.97438 * 7 6 5 9 9 H 1.07997 * 120.00020 * 7.00509 * 8 7 6 10 10 C 1.39758 * 119.99895 * 187.00744 * 8 7 6 11 11 N 1.31018 * 120.00237 * 10.49622 * 10 8 7 12 12 Si 1.86804 * 119.99908 * 190.49455 * 10 8 7 13 13 H 1.48503 * 109.46826 * 93.95607 * 12 10 8 14 14 H 1.48497 * 109.47086 * 213.95957 * 12 10 8 15 15 H 1.48502 * 109.46983 * 333.96396 * 12 10 8 16 16 C 1.38680 * 105.37990 * 179.97438 * 7 6 5 17 17 O 1.33958 * 109.32713 * 359.97438 * 16 7 6 18 18 C 1.34994 * 111.56457 * 0.02562 * 17 16 7 19 19 C 1.38428 * 119.74169 * 179.97438 * 3 2 1 20 20 H 1.08997 * 109.47057 * 60.00225 * 1 2 3 21 21 H 1.09001 * 109.46468 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46974 * 299.99726 * 1 2 3 23 23 H 1.08004 * 119.94629 * 359.97438 * 4 3 2 24 24 H 1.07999 * 120.13215 * 179.97438 * 5 4 3 25 25 H 0.96997 * 120.00347 * 179.97438 * 11 10 8 26 26 H 1.08004 * 125.33769 * 180.02562 * 16 7 6 27 27 H 1.08002 * 120.00807 * 0.04503 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2829 2.3740 -0.0005 5 6 1.9009 3.6060 0.0000 6 6 3.2899 3.6809 0.0016 7 6 4.2573 4.7993 0.0030 8 6 3.9683 6.1788 0.0026 9 1 2.9489 6.5171 0.1152 10 6 5.0011 7.1090 -0.1435 11 7 6.2009 6.7078 -0.4842 12 14 4.6708 8.9246 0.1468 13 1 5.0063 9.2702 1.5515 14 1 5.5075 9.7336 -0.7755 15 1 3.2360 9.2131 -0.1047 16 6 5.5092 4.2028 0.0049 17 8 5.3656 2.8709 0.0053 18 6 4.0642 2.5121 0.0032 19 6 3.4286 1.2771 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2047 2.3116 -0.0014 24 1 1.3091 4.5094 -0.0008 25 1 6.9176 7.3534 -0.5859 26 1 6.4521 4.7294 0.0067 27 1 4.0129 0.3688 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075577562.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -23.169922 kcal Electronic energy + Delta-G solvation = -13886.160889 eV Core-core repulsion = 11382.425689 eV Total energy + Delta-G solvation = -2503.735199 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71775 -38.98083 -35.59776 -34.00409 -30.98289 -29.60104 -27.98448 -26.57719 -25.27005 -22.31994 -20.81157 -20.01749 -17.79720 -16.41859 -16.01022 -15.71978 -15.41733 -14.83804 -14.43412 -14.27776 -13.30138 -12.90551 -12.55825 -12.40993 -11.79360 -11.66625 -11.43008 -11.33130 -11.02358 -10.40371 -10.36755 -9.96904 -9.65891 -9.53702 -8.40553 -7.64894 -6.76730 -6.72275 -4.27170 1.96492 2.26379 2.99272 3.09557 3.13327 3.47951 3.92154 3.96795 4.52894 4.62911 5.23353 5.32344 5.35747 5.49964 5.53263 5.64513 5.98561 6.07730 6.25398 6.64907 6.88020 6.91838 7.16565 7.18126 7.31568 7.60561 7.90240 7.97349 8.35261 8.61693 8.88826 9.06979 10.29985 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.053460 B = 0.007485 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.626234 B = 3739.993919 C = 4235.867383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.323 6.323 3 C 0.128 3.872 4 C -0.250 4.250 5 C -0.027 4.027 6 C -0.168 4.168 7 C 0.012 3.988 8 C -0.422 4.422 9 H 0.075 0.925 10 C 0.059 3.941 11 N -0.820 5.820 12 Si 0.921 3.079 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.170 4.170 17 O -0.204 6.204 18 C 0.082 3.918 19 C -0.166 4.166 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.051 0.949 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.279 0.721 26 H 0.218 0.782 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -5.123 0.828 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C 0.083 3.917 4 C -0.269 4.269 5 C -0.045 4.045 6 C -0.169 4.169 7 C 0.010 3.990 8 C -0.453 4.453 9 H 0.093 0.907 10 C -0.153 4.153 11 N -0.450 5.450 12 Si 0.746 3.254 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.235 4.235 17 O -0.105 6.105 18 C 0.031 3.969 19 C -0.186 4.186 20 H 0.070 0.930 21 H 0.110 0.890 22 H 0.070 0.930 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.757 -5.364 0.772 8.662 hybrid contribution -0.432 1.185 0.078 1.264 sum -7.189 -4.179 0.849 8.359 Atomic orbital electron populations 1.22921 0.79204 1.02937 1.01176 1.85960 1.20648 1.27446 1.89664 1.18189 0.90965 0.83564 0.98947 1.20788 0.98845 0.92087 1.15148 1.20186 0.92822 0.96357 0.95118 1.20203 0.93700 0.94609 1.08429 1.18720 0.89019 0.92014 0.99256 1.18720 0.94695 0.89024 1.42850 0.90655 1.25742 0.94622 1.01529 0.93439 1.69490 1.02202 1.36617 1.36684 0.86079 0.79281 0.81176 0.78835 1.19626 1.20372 1.18866 1.25121 1.00771 0.75574 1.22003 1.83684 1.23051 1.27339 1.76450 1.19082 0.83793 0.93623 1.00373 1.18524 0.90783 0.94789 1.14488 0.93003 0.88967 0.93004 0.86289 0.86354 0.90956 0.76623 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.80 101.05 0.99 1.37 15 2 O -0.32 -5.37 10.49 -19.39 -0.20 -5.58 15 3 C 0.13 2.46 6.68 -39.19 -0.26 2.20 15 4 C -0.25 -4.64 9.02 -39.41 -0.36 -5.00 15 5 C -0.03 -0.57 10.08 -39.41 -0.40 -0.96 15 6 C -0.17 -4.21 6.36 -104.89 -0.67 -4.88 15 7 C 0.01 0.34 6.09 -104.76 -0.64 -0.30 15 8 C -0.42 -11.36 9.42 -37.99 -0.36 -11.72 15 9 H 0.08 1.93 7.86 -52.49 -0.41 1.52 15 10 C 0.06 1.50 5.45 -17.33 -0.09 1.41 15 11 N -0.82 -21.29 10.61 55.54 0.59 -20.71 15 12 Si 0.92 19.05 29.57 -169.99 -5.03 14.03 15 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 14 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 15 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 16 C -0.17 -4.63 11.04 30.90 0.34 -4.29 15 17 O -0.20 -5.31 10.52 4.69 0.05 -5.26 15 18 C 0.08 2.01 7.36 -38.60 -0.28 1.72 15 19 C -0.17 -3.53 9.99 -39.27 -0.39 -3.93 15 20 H 0.05 0.56 7.64 -51.93 -0.40 0.16 15 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.56 7.65 -51.93 -0.40 0.16 15 23 H 0.12 1.79 6.26 -52.48 -0.33 1.46 15 24 H 0.12 2.30 8.06 -52.49 -0.42 1.88 15 25 H 0.28 6.60 8.30 -40.82 -0.34 6.26 15 26 H 0.22 5.89 5.99 -52.48 -0.31 5.57 15 27 H 0.12 2.36 8.06 -52.49 -0.42 1.93 15 LS Contribution 241.77 15.07 3.64 3.64 Total: -1.00 -28.96 241.77 -5.32 -34.28 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.25 Total: 3.96 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -2.12 Total: -24.37 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.59 Total: -20.71 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.15 Total: -10.83 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.96 -5.32 -34.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577562.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.105 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds