Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35887 * 116.99737 * 2 1 4 4 C 1.39115 * 119.74114 * 359.97438 * 3 2 1 5 5 C 1.37822 * 120.09946 * 179.97438 * 4 3 2 6 6 C 1.39100 * 119.72726 * 359.97438 * 5 4 3 7 7 C 1.47877 * 133.94708 * 180.02562 * 6 5 4 8 8 C 1.40945 * 127.31121 * 359.97438 * 7 6 5 9 9 H 1.07997 * 120.00020 * 7.00509 * 8 7 6 10 10 C 1.39758 * 119.99895 * 187.00744 * 8 7 6 11 11 N 1.31018 * 120.00237 * 10.49622 * 10 8 7 12 12 Si 1.86804 * 119.99908 * 190.49455 * 10 8 7 13 13 H 1.48503 * 109.46826 * 93.95607 * 12 10 8 14 14 H 1.48497 * 109.47086 * 213.95957 * 12 10 8 15 15 H 1.48502 * 109.46983 * 333.96396 * 12 10 8 16 16 C 1.38680 * 105.37990 * 179.97438 * 7 6 5 17 17 O 1.33958 * 109.32713 * 359.97438 * 16 7 6 18 18 C 1.34994 * 111.56457 * 0.02562 * 17 16 7 19 19 C 1.38428 * 119.74169 * 179.97438 * 3 2 1 20 20 H 1.08997 * 109.47057 * 60.00225 * 1 2 3 21 21 H 1.09001 * 109.46468 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46974 * 299.99726 * 1 2 3 23 23 H 1.08004 * 119.94629 * 359.97438 * 4 3 2 24 24 H 1.07999 * 120.13215 * 179.97438 * 5 4 3 25 25 H 0.96997 * 120.00347 * 179.97438 * 11 10 8 26 26 H 1.08004 * 125.33769 * 180.02562 * 16 7 6 27 27 H 1.08002 * 120.00807 * 0.04503 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2829 2.3740 -0.0005 5 6 1.9009 3.6060 0.0000 6 6 3.2899 3.6809 0.0016 7 6 4.2573 4.7993 0.0030 8 6 3.9683 6.1788 0.0026 9 1 2.9489 6.5171 0.1152 10 6 5.0011 7.1090 -0.1435 11 7 6.2009 6.7078 -0.4842 12 14 4.6708 8.9246 0.1468 13 1 5.0063 9.2702 1.5515 14 1 5.5075 9.7336 -0.7755 15 1 3.2360 9.2131 -0.1047 16 6 5.5092 4.2028 0.0049 17 8 5.3656 2.8709 0.0053 18 6 4.0642 2.5121 0.0032 19 6 3.4286 1.2771 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2047 2.3116 -0.0014 24 1 1.3091 4.5094 -0.0008 25 1 6.9176 7.3534 -0.5859 26 1 6.4521 4.7294 0.0067 27 1 4.0129 0.3688 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577562.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -40.816559 kcal Electronic energy + Delta-G solvation = -13886.926104 eV Core-core repulsion = 11382.425689 eV Total energy + Delta-G solvation = -2504.500415 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.54336 -40.42358 -37.19807 -35.94066 -32.78275 -31.29476 -29.56980 -27.92238 -27.13439 -24.02190 -22.44951 -21.92381 -19.45890 -18.11915 -17.82305 -17.28055 -16.74333 -16.53785 -16.19555 -15.86981 -15.05656 -14.44776 -14.24722 -14.01681 -13.33639 -13.10547 -13.04891 -12.95119 -12.63086 -11.97082 -11.87390 -11.76846 -11.47755 -11.33914 -10.19065 -9.39380 -8.62704 -8.57469 -6.30559 0.26240 0.57826 1.33938 1.40687 1.55250 2.00991 2.04984 2.23973 2.79639 2.97985 3.38228 3.85838 4.10241 4.25337 4.32268 4.49036 4.51762 4.60703 4.79230 4.94127 5.09276 5.25105 5.37429 5.48256 5.54125 5.79727 5.95964 6.36608 6.50857 6.64765 6.89176 7.11402 8.41262 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.053460 B = 0.007485 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.626234 B = 3739.993919 C = 4235.867383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.147 3.853 4 C -0.229 4.229 5 C -0.033 4.033 6 C -0.205 4.205 7 C -0.010 4.010 8 C -0.456 4.456 9 H 0.081 0.919 10 C 0.015 3.985 11 N -0.846 5.846 12 Si 0.999 3.001 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.256 1.256 16 C -0.208 4.208 17 O -0.221 6.221 18 C 0.063 3.937 19 C -0.183 4.183 20 H 0.065 0.935 21 H 0.125 0.875 22 H 0.066 0.934 23 H 0.166 0.834 24 H 0.135 0.865 25 H 0.288 0.712 26 H 0.206 0.794 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 -5.296 0.958 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.102 3.898 4 C -0.247 4.247 5 C -0.051 4.051 6 C -0.206 4.206 7 C -0.013 4.013 8 C -0.487 4.487 9 H 0.099 0.901 10 C -0.195 4.195 11 N -0.476 5.476 12 Si 0.820 3.180 13 H -0.189 1.189 14 H -0.194 1.194 15 H -0.180 1.180 16 C -0.272 4.272 17 O -0.125 6.125 18 C 0.013 3.987 19 C -0.202 4.202 20 H 0.084 0.916 21 H 0.143 0.857 22 H 0.084 0.916 23 H 0.183 0.817 24 H 0.153 0.847 25 H 0.099 0.901 26 H 0.222 0.778 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.584 -5.577 0.899 11.125 hybrid contribution 0.252 1.023 0.022 1.054 sum -9.332 -4.554 0.921 10.424 Atomic orbital electron populations 1.23406 0.76022 1.05762 1.02471 1.85990 1.23772 1.25703 1.88802 1.18281 0.90411 0.85026 0.96122 1.21225 1.01051 0.90469 1.12002 1.20481 0.91388 0.98402 0.94845 1.20463 0.95413 0.93884 1.10856 1.19179 0.90017 0.93215 0.98878 1.19068 0.95571 0.89476 1.44550 0.90131 1.26786 0.94013 1.06437 0.92236 1.69579 1.03152 1.38560 1.36281 0.84917 0.79524 0.74648 0.78919 1.18946 1.19357 1.18010 1.24908 1.00736 0.76343 1.25250 1.83600 1.24342 1.26735 1.77777 1.19574 0.83212 0.94946 1.00961 1.18796 0.92219 0.94074 1.15127 0.91641 0.85703 0.91580 0.81663 0.84710 0.90106 0.77775 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.80 113.37 1.11 1.42 15 2 O -0.33 -9.63 10.49 -92.28 -0.97 -10.60 15 3 C 0.15 5.27 6.68 22.53 0.15 5.42 15 4 C -0.23 -7.71 9.02 22.38 0.20 -7.51 15 5 C -0.03 -1.36 10.08 22.38 0.23 -1.14 15 6 C -0.20 -10.51 6.36 -20.04 -0.13 -10.64 15 7 C -0.01 -0.60 6.09 -19.96 -0.12 -0.72 15 8 C -0.46 -25.30 9.42 23.30 0.22 -25.08 15 9 H 0.08 4.20 7.86 -2.91 -0.02 4.17 15 10 C 0.02 0.79 5.45 85.18 0.46 1.26 15 11 N -0.85 -45.37 10.61 21.80 0.23 -45.14 15 12 Si 1.00 38.94 29.57 68.60 2.03 40.97 15 13 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 14 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 15 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 16 C -0.21 -12.11 11.04 67.93 0.75 -11.36 15 17 O -0.22 -12.27 10.52 -6.12 -0.06 -12.33 15 18 C 0.06 3.16 7.36 22.91 0.17 3.33 15 19 C -0.18 -7.67 9.99 22.47 0.22 -7.45 15 20 H 0.06 1.04 7.64 -2.39 -0.02 1.03 15 21 H 0.12 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.07 1.05 7.65 -2.39 -0.02 1.03 15 23 H 0.17 4.01 6.26 -2.91 -0.02 3.99 15 24 H 0.14 5.02 8.06 -2.91 -0.02 4.99 15 25 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 26 H 0.21 12.05 5.99 -2.91 -0.02 12.03 15 27 H 0.14 5.20 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -65.68 241.77 5.69 -60.00 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.19 Total: 19.58 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 3.27 Total: -52.48 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.23 Total: -45.14 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.03 Total: -22.93 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -65.68 5.69 -60.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577562.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.182 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds