Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00448 * 2 1 4 4 H 1.48497 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47233 * 300.00015 * 3 2 1 6 6 H 1.48506 * 109.46908 * 59.99766 * 3 2 1 7 7 C 1.37881 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99982 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.34637 * 125.81731 * 90.02847 * 10 9 7 12 12 O 1.21692 * 125.16085 * 359.97438 * 11 10 9 13 13 N 1.34631 * 109.67604 * 179.97438 * 11 10 9 14 14 H 0.97008 * 125.82028 * 179.97438 * 13 11 10 15 15 C 1.39291 * 108.36240 * 0.02562 * 13 11 10 16 16 C 1.38662 * 133.33770 * 180.02562 * 15 13 11 17 17 C 1.38105 * 119.85244 * 179.97438 * 16 15 13 18 18 C 1.38446 * 120.28171 * 359.97438 * 17 16 15 19 19 C 1.38103 * 120.28105 * 0.04422 * 18 17 16 20 20 C 1.38659 * 119.84996 * 359.66601 * 19 18 17 21 21 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46872 * 60.00547 * 9 7 2 23 23 H 1.08997 * 109.47234 * 300.00099 * 9 7 2 24 24 H 1.08004 * 120.07385 * 359.95182 * 16 15 13 25 25 H 1.07997 * 119.85673 * 180.02562 * 17 16 15 26 26 H 1.07996 * 119.85532 * 180.02562 * 18 17 16 27 27 H 1.08001 * 120.06926 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 2.7145 -4.2110 1.0950 12 8 2.4566 -3.9086 2.2452 13 7 3.5545 -5.1946 0.7216 14 1 4.0510 -5.7748 1.3199 15 6 3.5903 -5.2363 -0.6702 16 6 4.2688 -6.0314 -1.5814 17 6 4.0940 -5.8271 -2.9360 18 6 3.2438 -4.8323 -3.3880 19 6 2.5641 -4.0352 -2.4881 20 6 2.7286 -4.2368 -1.1262 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6245 -2.5563 0.8919 24 1 4.9329 -6.8084 -1.2324 25 1 4.6222 -6.4466 -3.6457 26 1 3.1120 -4.6789 -4.4489 27 1 1.9020 -3.2599 -2.8445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075946319.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = 18.447263 kcal Electronic energy + Delta-G solvation = -14133.397239 eV Core-core repulsion = 11663.759447 eV Total energy + Delta-G solvation = -2469.637792 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.79331 -37.77081 -35.28643 -34.61337 -32.57285 -29.98154 -28.62904 -27.42924 -23.69472 -22.16646 -21.87035 -20.24288 -17.57863 -17.26546 -16.74555 -15.46856 -15.38612 -15.05296 -14.23486 -13.83228 -13.62996 -13.40767 -12.53859 -12.51003 -11.92159 -11.51486 -11.26925 -10.84198 -10.75070 -10.56608 -10.30772 -10.20498 -9.77965 -9.29083 -8.57934 -8.03296 -7.23285 -6.18670 -4.25372 1.56212 1.75800 3.05447 3.24556 3.32115 3.37974 3.65116 3.95885 4.10042 4.35949 4.91096 5.15580 5.24206 5.49264 5.63308 5.69728 5.82486 6.21271 6.32485 6.62513 6.78441 6.95746 7.08615 7.14074 7.23154 7.51121 7.78128 7.98150 8.06236 8.74604 8.95628 9.40915 10.89223 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032003 B = 0.009495 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.695283 B = 2948.079486 C = 3431.087815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.257 3.743 10 N -0.515 5.515 11 C 0.673 3.327 12 O -0.559 6.559 13 N -0.652 5.652 14 H 0.425 0.575 15 C 0.072 3.928 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.116 3.884 21 H 0.266 0.734 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -10.575 -6.691 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.139 3.861 10 N -0.234 5.234 11 C 0.375 3.625 12 O -0.435 6.435 13 N -0.298 5.298 14 H 0.265 0.735 15 C -0.031 4.031 16 C -0.133 4.133 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.122 4.122 20 C 0.012 3.988 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.208 -10.029 -5.831 13.158 hybrid contribution 0.675 0.705 0.331 1.031 sum 6.883 -9.324 -5.499 12.828 Atomic orbital electron populations 1.69933 1.06025 1.27405 1.49635 1.24920 0.94949 0.99397 0.94534 0.86333 0.80027 0.82725 0.77767 1.19651 1.20677 1.20672 1.21385 0.93655 0.90059 1.52306 0.91971 1.19536 0.86277 0.80670 0.99577 1.45966 1.42138 1.32342 1.02908 1.16111 0.80709 0.80369 0.85327 1.91006 1.66188 1.68978 1.17364 1.43069 1.45568 1.35674 1.05450 0.73476 1.18089 1.01533 0.99929 0.83569 1.19912 1.01436 1.00110 0.91860 1.20677 1.00566 0.99579 0.94089 1.20784 0.97679 0.96063 0.99041 1.20205 1.01933 1.01071 0.89033 1.18242 0.96585 0.93895 0.90119 0.92411 0.93463 0.92990 0.86043 0.85810 0.85636 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.54 -15.20 9.39 -34.44 -0.32 -15.53 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.26 6.78 5.73 -5.19 -0.03 6.75 15 10 N -0.52 -11.98 2.77 -120.20 -0.33 -12.31 15 11 C 0.67 15.40 8.83 -87.17 -0.77 14.63 15 12 O -0.56 -14.70 17.77 5.20 0.09 -14.60 15 13 N -0.65 -11.36 6.15 -14.30 -0.09 -11.45 15 14 H 0.43 5.78 8.96 -40.82 -0.37 5.41 15 15 C 0.07 1.20 7.26 -83.80 -0.61 0.60 15 16 C -0.11 -1.45 10.07 -39.47 -0.40 -1.85 15 17 C -0.13 -1.53 10.03 -39.55 -0.40 -1.93 15 18 C -0.12 -1.52 10.03 -39.55 -0.40 -1.91 15 19 C -0.10 -1.70 10.02 -39.48 -0.40 -2.09 15 20 C 0.12 2.27 6.83 -83.80 -0.57 1.69 15 21 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 23 H 0.05 1.50 8.03 -51.93 -0.42 1.08 15 24 H 0.12 1.21 8.06 -52.48 -0.42 0.78 15 25 H 0.12 1.08 8.06 -52.49 -0.42 0.65 15 26 H 0.13 1.29 8.06 -52.49 -0.42 0.86 15 27 H 0.13 2.25 8.06 -52.49 -0.42 1.83 15 LS Contribution 247.96 15.07 3.74 3.74 Total: -1.00 -32.49 247.96 -7.30 -39.79 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -2.44 Total: 1.22 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.99 Total: 2.09 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.32 Total: -48.84 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.49 -7.30 -39.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075946319.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.239 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds