Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00448 * 2 1 4 4 H 1.48497 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47233 * 300.00015 * 3 2 1 6 6 H 1.48506 * 109.46908 * 59.99766 * 3 2 1 7 7 C 1.37881 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99982 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.34637 * 125.81731 * 90.02847 * 10 9 7 12 12 O 1.21692 * 125.16085 * 359.97438 * 11 10 9 13 13 N 1.34631 * 109.67604 * 179.97438 * 11 10 9 14 14 H 0.97008 * 125.82028 * 179.97438 * 13 11 10 15 15 C 1.39291 * 108.36240 * 0.02562 * 13 11 10 16 16 C 1.38662 * 133.33770 * 180.02562 * 15 13 11 17 17 C 1.38105 * 119.85244 * 179.97438 * 16 15 13 18 18 C 1.38446 * 120.28171 * 359.97438 * 17 16 15 19 19 C 1.38103 * 120.28105 * 0.04422 * 18 17 16 20 20 C 1.38659 * 119.84996 * 359.66601 * 19 18 17 21 21 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46872 * 60.00547 * 9 7 2 23 23 H 1.08997 * 109.47234 * 300.00099 * 9 7 2 24 24 H 1.08004 * 120.07385 * 359.95182 * 16 15 13 25 25 H 1.07997 * 119.85673 * 180.02562 * 17 16 15 26 26 H 1.07996 * 119.85532 * 180.02562 * 18 17 16 27 27 H 1.08001 * 120.06926 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 2.7145 -4.2110 1.0950 12 8 2.4566 -3.9086 2.2452 13 7 3.5545 -5.1946 0.7216 14 1 4.0510 -5.7748 1.3199 15 6 3.5903 -5.2363 -0.6702 16 6 4.2688 -6.0314 -1.5814 17 6 4.0940 -5.8271 -2.9360 18 6 3.2438 -4.8323 -3.3880 19 6 2.5641 -4.0352 -2.4881 20 6 2.7286 -4.2368 -1.1262 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6245 -2.5563 0.8919 24 1 4.9329 -6.8084 -1.2324 25 1 4.6222 -6.4466 -3.6457 26 1 3.1120 -4.6789 -4.4489 27 1 1.9020 -3.2599 -2.8445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075946319.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = -3.781455 kcal Electronic energy + Delta-G solvation = -14134.361148 eV Core-core repulsion = 11663.759447 eV Total energy + Delta-G solvation = -2470.601701 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.29945 -39.21477 -36.89809 -36.32979 -34.57732 -31.29275 -30.09761 -29.22270 -25.69168 -23.44261 -23.25267 -21.94133 -19.03190 -18.85041 -18.62522 -17.10309 -16.97494 -16.87721 -15.92294 -15.20443 -14.90618 -14.79039 -14.57085 -13.95172 -13.59901 -13.24741 -12.96010 -12.71687 -12.39639 -12.21173 -11.89709 -11.82363 -11.59257 -11.09840 -10.74965 -9.29411 -8.75312 -8.32536 -6.51437 0.36186 0.55608 1.34191 1.36327 1.45640 1.53694 1.93814 2.32385 2.55257 2.91178 2.95864 3.68504 4.17333 4.20112 4.45557 4.51339 4.58561 4.87892 4.91451 5.09580 5.23611 5.44397 5.54754 5.66628 5.69000 5.82451 5.98233 6.03453 6.49662 6.56617 7.15478 7.30770 8.73543 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032003 B = 0.009495 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.695283 B = 2948.079486 C = 3431.087815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.049 0.951 9 C 0.274 3.726 10 N -0.531 5.531 11 C 0.657 3.343 12 O -0.613 6.613 13 N -0.628 5.628 14 H 0.443 0.557 15 C 0.063 3.937 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.121 4.121 20 C 0.064 3.936 21 H 0.273 0.727 22 H 0.041 0.959 23 H 0.013 0.987 24 H 0.164 0.836 25 H 0.175 0.825 26 H 0.161 0.839 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -11.855 -9.158 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.594 4.594 8 H 0.067 0.933 9 C 0.155 3.845 10 N -0.250 5.250 11 C 0.358 3.642 12 O -0.494 6.494 13 N -0.275 5.275 14 H 0.286 0.714 15 C -0.039 4.039 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.142 4.142 20 C -0.038 4.038 21 H 0.082 0.918 22 H 0.059 0.941 23 H 0.031 0.969 24 H 0.182 0.818 25 H 0.192 0.808 26 H 0.179 0.821 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.617 -11.377 -8.362 16.541 hybrid contribution -0.020 0.963 0.914 1.328 sum 8.596 -10.414 -7.448 15.422 Atomic orbital electron populations 1.70028 1.07454 1.28759 1.49702 1.25832 0.95892 1.02991 0.93607 0.85264 0.78414 0.78023 0.78495 1.19614 1.18718 1.20116 1.21536 0.93118 0.91444 1.53266 0.93270 1.18973 0.86582 0.81757 0.97204 1.45687 1.42259 1.32146 1.04890 1.16314 0.81724 0.81564 0.84592 1.90934 1.68315 1.70940 1.19165 1.42699 1.44110 1.34192 1.06486 0.71353 1.18457 1.02071 1.00345 0.83062 1.20493 1.00217 0.99434 0.91610 1.21322 0.98590 0.98311 0.94378 1.21252 0.96017 0.94771 1.00096 1.20392 1.03040 1.02102 0.88705 1.18728 0.99025 0.95788 0.90248 0.91786 0.94117 0.96938 0.81827 0.80768 0.82110 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.29 21.45 0.28 -54.66 15 2 C 0.02 0.99 5.46 84.66 0.46 1.46 15 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 15 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 15 5 H -0.26 -11.28 7.11 99.48 0.71 -10.58 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.56 -33.09 9.39 25.60 0.24 -32.85 15 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 15 9 C 0.27 15.56 5.73 85.63 0.49 16.05 15 10 N -0.53 -26.16 2.77 -652.49 -1.81 -27.96 15 11 C 0.66 31.62 8.83 179.14 1.58 33.21 15 12 O -0.61 -34.37 17.77 -4.32 -0.08 -34.44 15 13 N -0.63 -21.84 6.15 -317.46 -1.95 -23.79 15 14 H 0.44 11.63 8.96 -92.70 -0.83 10.80 15 15 C 0.06 1.99 7.26 38.39 0.28 2.27 15 16 C -0.10 -2.03 10.07 22.34 0.22 -1.80 15 17 C -0.11 -1.88 10.03 22.29 0.22 -1.65 15 18 C -0.10 -2.26 10.03 22.29 0.22 -2.04 15 19 C -0.12 -4.01 10.02 22.34 0.22 -3.79 15 20 C 0.06 2.52 6.83 38.39 0.26 2.78 15 21 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 22 H 0.04 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.01 0.79 8.03 -2.39 -0.02 0.77 15 24 H 0.16 2.13 8.06 -2.91 -0.02 2.11 15 25 H 0.17 1.51 8.06 -2.91 -0.02 1.49 15 26 H 0.16 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.12 4.10 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -76.08 247.96 3.05 -73.03 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.36 Total: 7.17 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.21 Total: 13.64 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.47 Total: -106.41 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.08 Total: -34.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.08 3.05 -73.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075946319.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.248 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds