Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34308 * 125.46631 * 2 1 4 4 C 1.46858 * 106.02515 * 180.10337 * 3 2 1 5 5 C 1.47814 * 127.14232 * 179.82823 * 4 3 2 6 6 C 1.35510 * 125.29471 * 179.97438 * 5 4 3 7 7 C 1.46912 * 105.99691 * 180.14988 * 6 5 4 8 8 C 1.41437 * 127.29429 * 179.89434 * 7 6 5 9 9 H 1.08005 * 120.00280 * 162.02516 * 8 7 6 10 10 C 1.39555 * 120.00002 * 341.75514 * 8 7 6 11 11 N 1.31102 * 119.99968 * 165.52792 * 10 8 7 12 12 Si 1.86798 * 120.00131 * 345.53293 * 10 8 7 13 13 H 1.48503 * 109.47442 * 89.94527 * 12 10 8 14 14 H 1.48498 * 109.47534 * 209.94755 * 12 10 8 15 15 H 1.48503 * 109.47070 * 329.94359 * 12 10 8 16 16 C 1.39213 * 105.41124 * 359.63154 * 7 6 5 17 17 O 1.33873 * 108.15811 * 0.22503 * 16 7 6 18 18 C 1.36131 * 105.70607 * 359.56864 * 4 3 2 19 19 O 1.34072 * 108.40329 * 0.25985 * 18 4 3 20 20 H 1.09002 * 109.47354 * 180.35991 * 1 2 3 21 21 H 1.09001 * 109.47609 * 300.36274 * 1 2 3 22 22 H 1.09004 * 109.47028 * 60.36056 * 1 2 3 23 23 H 1.07996 * 126.98302 * 359.92854 * 3 2 1 24 24 H 1.08008 * 127.00202 * 0.02562 * 6 5 4 25 25 H 0.97006 * 119.99756 * 179.97438 * 11 10 8 26 26 H 1.08003 * 125.92257 * 180.22628 * 16 7 6 27 27 H 1.08000 * 125.79854 * 180.25786 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2862 1.0939 0.0000 4 6 3.6711 0.6051 -0.0025 5 6 4.9048 1.4191 -0.0070 6 6 6.1675 0.9271 -0.0088 7 6 7.0574 2.0960 -0.0096 8 6 8.4718 2.0962 -0.0093 9 1 9.0118 2.9857 -0.2986 10 6 9.1697 0.9488 0.3702 11 7 10.4496 0.8429 0.1067 12 14 8.2802 -0.4361 1.2534 13 1 7.7407 -1.3941 0.2551 14 1 9.2295 -1.1403 2.1524 15 1 7.1631 0.1250 2.0550 16 6 6.2138 3.2033 -0.0168 17 8 4.9491 2.7643 -0.0151 18 6 3.5824 -0.7533 0.0060 19 8 2.2854 -1.0928 0.0075 20 1 -0.3634 -1.0276 0.0065 21 1 -0.3634 0.5194 0.8867 22 1 -0.3633 0.5082 -0.8932 23 1 1.9606 2.1236 -0.0011 24 1 6.4600 -0.1126 -0.0076 25 1 10.9347 0.0454 0.3708 26 1 6.5255 4.2374 -0.0228 27 1 4.4154 -1.4407 0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082391879.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = 15.155962 kcal Electronic energy + Delta-G solvation = -13776.423152 eV Core-core repulsion = 11274.349887 eV Total energy + Delta-G solvation = -2502.073264 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.16271 -40.59052 -33.76804 -33.13107 -32.31054 -31.23650 -28.24618 -26.21026 -25.29013 -22.16467 -21.11719 -19.70121 -18.54234 -17.57665 -16.50887 -15.98721 -15.66971 -14.58747 -14.46950 -14.22193 -13.33732 -13.17734 -13.06278 -12.79056 -12.60538 -12.19648 -11.67841 -11.44016 -11.09529 -10.55791 -10.20765 -9.93045 -9.67354 -9.29074 -8.52579 -8.13860 -7.01058 -6.75050 -4.28958 1.75698 2.26232 2.98651 3.10139 3.16781 3.30302 3.57167 3.88497 4.06875 4.10632 4.69364 5.14741 5.27720 5.34237 5.36882 5.50722 5.57348 5.74926 6.10512 6.14628 6.30516 6.49204 6.69572 6.98803 7.22941 7.32090 7.41357 7.74165 8.31234 8.51553 8.76900 8.98269 10.30848 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045138 B = 0.008237 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.165306 B = 3398.280042 C = 3936.450413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.021 4.021 3 C -0.197 4.197 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.257 4.257 7 C 0.016 3.984 8 C -0.443 4.443 9 H 0.089 0.911 10 C 0.085 3.915 11 N -0.831 5.831 12 Si 0.906 3.094 13 H -0.273 1.273 14 H -0.292 1.292 15 H -0.247 1.247 16 C -0.214 4.214 17 O -0.185 6.185 18 C -0.031 4.031 19 O -0.179 6.179 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.152 0.848 24 H 0.129 0.871 25 H 0.280 0.720 26 H 0.184 0.816 27 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 -3.786 0.784 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.216 4.216 4 C -0.091 4.091 5 C -0.009 4.009 6 C -0.277 4.277 7 C 0.013 3.987 8 C -0.474 4.474 9 H 0.107 0.893 10 C -0.130 4.130 11 N -0.459 5.459 12 Si 0.734 3.266 13 H -0.200 1.200 14 H -0.220 1.220 15 H -0.171 1.171 16 C -0.280 4.280 17 O -0.085 6.085 18 C -0.098 4.098 19 O -0.077 6.077 20 H 0.093 0.907 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.170 0.830 24 H 0.146 0.854 25 H 0.091 0.909 26 H 0.201 0.799 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.896 -3.978 0.788 15.439 hybrid contribution 0.330 -0.540 0.330 0.714 sum -14.567 -4.518 1.118 15.292 Atomic orbital electron populations 1.20262 0.85196 1.03711 1.03439 1.22191 0.93886 0.84233 1.06651 1.22582 0.91061 0.99383 1.08595 1.19232 0.90778 0.91829 1.07222 1.18771 0.91266 0.81727 1.09101 1.22721 0.92240 0.98937 1.13800 1.19351 0.93934 0.89276 0.96118 1.18569 0.88075 0.99827 1.40908 0.89326 1.25867 0.94785 0.98773 0.93574 1.69775 1.09345 1.28882 1.37911 0.86540 0.79682 0.80264 0.80081 1.19954 1.21962 1.17088 1.23858 0.78704 0.98004 1.27385 1.83448 1.31163 1.19586 1.74266 1.23834 0.83463 0.95002 1.07477 1.83788 1.16421 1.34822 1.72685 0.90744 0.89860 0.89850 0.83036 0.85365 0.90944 0.79904 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.40 36.00 0.37 -0.25 15 2 C -0.02 -0.29 7.29 -35.70 -0.26 -0.55 15 3 C -0.20 -3.25 11.03 -37.48 -0.41 -3.66 15 4 C -0.09 -1.75 6.32 -103.25 -0.65 -2.40 15 5 C 0.04 0.97 7.17 -36.64 -0.26 0.71 15 6 C -0.26 -6.39 7.93 -37.05 -0.29 -6.68 15 7 C 0.02 0.43 5.65 -104.81 -0.59 -0.16 15 8 C -0.44 -12.62 9.93 -37.87 -0.38 -12.99 15 9 H 0.09 2.62 8.06 -52.48 -0.42 2.19 15 10 C 0.08 2.34 5.51 -17.37 -0.10 2.25 15 11 N -0.83 -23.33 13.94 55.53 0.77 -22.55 15 12 Si 0.91 21.38 24.48 -169.99 -4.16 17.22 15 13 H -0.27 -6.10 6.64 56.52 0.38 -5.72 15 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 15 H -0.25 -5.94 6.51 56.52 0.37 -5.57 15 16 C -0.21 -5.25 12.21 31.09 0.38 -4.87 15 17 O -0.19 -4.45 10.54 6.05 0.06 -4.39 15 18 C -0.03 -0.53 11.82 29.98 0.35 -0.17 15 19 O -0.18 -2.79 10.55 6.67 0.07 -2.72 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.08 0.63 8.14 -51.93 -0.42 0.20 15 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 15 23 H 0.15 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.13 3.03 4.34 -52.48 -0.23 2.81 15 25 H 0.28 7.16 8.30 -40.82 -0.34 6.82 15 26 H 0.18 3.95 8.06 -52.48 -0.42 3.52 15 27 H 0.21 3.02 8.06 -52.49 -0.42 2.59 15 LS Contribution 244.31 15.07 3.68 3.68 Total: -1.00 -30.96 244.31 -3.79 -34.75 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -2.38 Total: 2.79 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -1.84 Total: -28.78 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.77 Total: -22.55 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.13 Total: -7.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.16 Total: 17.22 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.96 -3.79 -34.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082391879.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.908 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds