Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34308 * 125.46631 * 2 1 4 4 C 1.46858 * 106.02515 * 180.10337 * 3 2 1 5 5 C 1.47814 * 127.14232 * 179.82823 * 4 3 2 6 6 C 1.35510 * 125.29471 * 179.97438 * 5 4 3 7 7 C 1.46912 * 105.99691 * 180.14988 * 6 5 4 8 8 C 1.41437 * 127.29429 * 179.89434 * 7 6 5 9 9 H 1.08005 * 120.00280 * 162.02516 * 8 7 6 10 10 C 1.39555 * 120.00002 * 341.75514 * 8 7 6 11 11 N 1.31102 * 119.99968 * 165.52792 * 10 8 7 12 12 Si 1.86798 * 120.00131 * 345.53293 * 10 8 7 13 13 H 1.48503 * 109.47442 * 89.94527 * 12 10 8 14 14 H 1.48498 * 109.47534 * 209.94755 * 12 10 8 15 15 H 1.48503 * 109.47070 * 329.94359 * 12 10 8 16 16 C 1.39213 * 105.41124 * 359.63154 * 7 6 5 17 17 O 1.33873 * 108.15811 * 0.22503 * 16 7 6 18 18 C 1.36131 * 105.70607 * 359.56864 * 4 3 2 19 19 O 1.34072 * 108.40329 * 0.25985 * 18 4 3 20 20 H 1.09002 * 109.47354 * 180.35991 * 1 2 3 21 21 H 1.09001 * 109.47609 * 300.36274 * 1 2 3 22 22 H 1.09004 * 109.47028 * 60.36056 * 1 2 3 23 23 H 1.07996 * 126.98302 * 359.92854 * 3 2 1 24 24 H 1.08008 * 127.00202 * 0.02562 * 6 5 4 25 25 H 0.97006 * 119.99756 * 179.97438 * 11 10 8 26 26 H 1.08003 * 125.92257 * 180.22628 * 16 7 6 27 27 H 1.08000 * 125.79854 * 180.25786 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2862 1.0939 0.0000 4 6 3.6711 0.6051 -0.0025 5 6 4.9048 1.4191 -0.0070 6 6 6.1675 0.9271 -0.0088 7 6 7.0574 2.0960 -0.0096 8 6 8.4718 2.0962 -0.0093 9 1 9.0118 2.9857 -0.2986 10 6 9.1697 0.9488 0.3702 11 7 10.4496 0.8429 0.1067 12 14 8.2802 -0.4361 1.2534 13 1 7.7407 -1.3941 0.2551 14 1 9.2295 -1.1403 2.1524 15 1 7.1631 0.1250 2.0550 16 6 6.2138 3.2033 -0.0168 17 8 4.9491 2.7643 -0.0151 18 6 3.5824 -0.7533 0.0060 19 8 2.2854 -1.0928 0.0075 20 1 -0.3634 -1.0276 0.0065 21 1 -0.3634 0.5194 0.8867 22 1 -0.3633 0.5082 -0.8932 23 1 1.9606 2.1236 -0.0011 24 1 6.4600 -0.1126 -0.0076 25 1 10.9347 0.0454 0.3708 26 1 6.5255 4.2374 -0.0228 27 1 4.4154 -1.4407 0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082391879.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = -4.668321 kcal Electronic energy + Delta-G solvation = -13777.282797 eV Core-core repulsion = 11274.349887 eV Total energy + Delta-G solvation = -2502.932910 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.44342 -42.47420 -35.81500 -34.51749 -33.58765 -33.00958 -29.90221 -27.35156 -27.29269 -23.75239 -22.69166 -21.33991 -20.22350 -19.28566 -18.18498 -17.34075 -17.22599 -16.47488 -16.27243 -15.85714 -15.02886 -14.57226 -14.06728 -13.93859 -13.73646 -13.63635 -13.50552 -13.03677 -12.73736 -12.56148 -12.05879 -11.69799 -11.35935 -11.27318 -10.17983 -9.70122 -8.81853 -8.77316 -6.42441 0.28038 0.96632 1.12885 1.27343 1.45053 1.69616 1.91138 2.10840 2.15826 2.38269 3.16795 3.55254 3.95813 4.03456 4.24729 4.36847 4.49960 4.62542 4.77370 4.82967 4.93040 5.10880 5.12848 5.26896 5.44939 5.56554 5.75186 6.07415 6.16436 6.46501 6.75982 6.88021 8.29077 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045138 B = 0.008237 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.165306 B = 3398.280042 C = 3936.450413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.001 4.001 3 C -0.220 4.220 4 C -0.139 4.139 5 C 0.057 3.943 6 C -0.281 4.281 7 C -0.013 4.013 8 C -0.475 4.475 9 H 0.056 0.944 10 C 0.042 3.958 11 N -0.869 5.869 12 Si 0.964 3.036 13 H -0.249 1.249 14 H -0.278 1.278 15 H -0.255 1.255 16 C -0.214 4.214 17 O -0.188 6.188 18 C -0.011 4.011 19 O -0.176 6.176 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.161 0.839 24 H 0.141 0.859 25 H 0.290 0.710 26 H 0.205 0.795 27 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -5.594 1.203 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 C -0.239 4.239 4 C -0.141 4.141 5 C 0.007 3.993 6 C -0.301 4.301 7 C -0.016 4.016 8 C -0.506 4.506 9 H 0.074 0.926 10 C -0.169 4.169 11 N -0.498 5.498 12 Si 0.788 3.212 13 H -0.175 1.175 14 H -0.204 1.204 15 H -0.179 1.179 16 C -0.280 4.280 17 O -0.087 6.087 18 C -0.078 4.078 19 O -0.073 6.073 20 H 0.110 0.890 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.178 0.822 24 H 0.158 0.842 25 H 0.100 0.900 26 H 0.222 0.778 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -17.939 -5.780 1.194 18.885 hybrid contribution 1.098 0.073 0.158 1.112 sum -16.841 -5.708 1.352 17.833 Atomic orbital electron populations 1.20547 0.81225 1.05477 1.05312 1.23065 0.95776 0.82875 1.03322 1.22743 0.89970 1.00762 1.10392 1.19393 0.90796 0.92816 1.11059 1.19349 0.92489 0.81355 1.06119 1.22816 0.92480 0.99025 1.15769 1.19514 0.93620 0.91154 0.97302 1.18591 0.89202 0.99621 1.43193 0.92585 1.26653 0.95479 1.00958 0.93809 1.69814 1.10600 1.30259 1.39157 0.85651 0.78514 0.77695 0.79380 1.17451 1.20413 1.17934 1.24290 0.78749 0.98766 1.26173 1.83468 1.30681 1.20400 1.74167 1.24223 0.84554 0.94374 1.04672 1.83851 1.15958 1.35385 1.72062 0.89046 0.87900 0.87892 0.82168 0.84213 0.89983 0.77815 0.75723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.40 71.23 0.74 -0.17 15 2 C 0.00 -0.04 7.29 24.79 0.18 0.15 15 3 C -0.22 -6.69 11.03 23.63 0.26 -6.43 15 4 C -0.14 -5.18 6.32 -18.98 -0.12 -5.30 15 5 C 0.06 2.63 7.17 24.17 0.17 2.80 15 6 C -0.28 -13.84 7.93 23.91 0.19 -13.65 15 7 C -0.01 -0.72 5.65 -19.98 -0.11 -0.83 15 8 C -0.47 -28.17 9.93 23.38 0.23 -27.94 15 9 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 10 C 0.04 2.37 5.51 85.12 0.47 2.84 15 11 N -0.87 -49.98 13.94 21.77 0.30 -49.68 15 12 Si 0.96 43.75 24.48 68.60 1.68 45.43 15 13 H -0.25 -10.27 6.64 99.48 0.66 -9.61 15 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 15 H -0.26 -11.84 6.51 99.48 0.65 -11.19 15 16 C -0.21 -10.63 12.21 68.05 0.83 -9.80 15 17 O -0.19 -8.96 10.54 -1.26 -0.01 -8.98 15 18 C -0.01 -0.33 11.82 67.33 0.80 0.46 15 19 O -0.18 -4.81 10.55 0.94 0.01 -4.80 15 20 H 0.09 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.10 1.04 8.14 -2.39 -0.02 1.02 15 22 H 0.10 1.04 8.14 -2.38 -0.02 1.02 15 23 H 0.16 4.44 8.06 -2.91 -0.02 4.42 15 24 H 0.14 6.39 4.34 -2.91 -0.01 6.38 15 25 H 0.29 15.00 8.30 -92.70 -0.77 14.23 15 26 H 0.21 8.89 8.06 -2.91 -0.02 8.87 15 27 H 0.23 5.83 8.06 -2.91 -0.02 5.81 15 Total: -1.00 -68.30 244.31 6.70 -61.60 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.08 Total: 14.28 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 3.64 Total: -57.87 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.30 Total: -49.68 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.00 Total: -13.77 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.68 Total: 45.43 kcal Total: -68.30 6.70 -61.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082391879.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.936 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds