Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86798 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99560 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46680 * 149.99808 * 3 2 1 7 7 C 1.40350 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.41802 * 119.99813 * 0.27999 * 7 2 1 10 10 O 1.21763 * 120.00650 * 359.72091 * 9 7 2 11 11 C 1.47824 * 119.99468 * 179.72209 * 9 7 2 12 12 C 1.39765 * 120.14723 * 359.72733 * 11 9 7 13 13 C 1.37929 * 119.88109 * 179.73880 * 12 11 9 14 14 C 1.38218 * 120.12158 * 0.51889 * 13 12 11 15 15 C 1.38840 * 120.29161 * 359.75436 * 14 13 12 16 16 C 1.37632 * 120.19414 * 359.97438 * 15 14 13 17 17 C 1.51115 * 107.24099 * 179.97438 * 15 14 13 18 18 O 1.43928 * 105.95841 * 17.72353 * 17 15 14 19 19 C 1.43919 * 104.98559 * 331.46855 * 18 17 15 20 20 H 0.97005 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.05788 * 359.97438 * 12 11 9 22 22 H 1.08007 * 119.93652 * 180.25364 * 13 12 11 23 23 H 1.07999 * 120.09864 * 180.02562 * 16 15 14 24 24 H 1.09005 * 110.15260 * 136.84932 * 17 15 14 25 25 H 1.09002 * 110.15358 * 258.60007 * 17 15 14 26 26 H 1.08998 * 110.15233 * 147.66400 * 19 18 17 27 27 H 1.09003 * 110.15444 * 269.34012 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4401 0.7001 7 6 2.0071 -1.2155 0.0005 8 1 3.0871 -1.2154 0.0001 9 6 1.2980 -2.4435 -0.0049 10 8 0.0804 -2.4436 -0.0049 11 6 2.0372 -3.7236 -0.0105 12 6 3.4348 -3.7271 -0.0163 13 6 4.1190 -4.9248 -0.0161 14 6 3.4250 -6.1201 -0.0210 15 6 2.0366 -6.1237 -0.0211 16 6 1.3413 -4.9360 -0.0157 17 6 1.5925 -7.5682 -0.0278 18 8 2.7361 -8.3357 0.3901 19 6 3.8759 -7.5626 -0.0277 20 1 -0.4850 0.8401 -0.0004 21 1 3.9781 -2.7938 -0.0170 22 1 5.1991 -4.9285 -0.0163 23 1 0.2613 -4.9407 -0.0154 24 1 0.7685 -7.7109 0.6714 25 1 1.2889 -7.8631 -1.0322 26 1 4.7006 -7.7015 0.6714 27 1 4.1818 -7.8569 -1.0317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082579567.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -57.938261 kcal Electronic energy + Delta-G solvation = -13795.789155 eV Core-core repulsion = 11290.546287 eV Total energy + Delta-G solvation = -2505.242868 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.18877 -37.53490 -35.80693 -32.79194 -31.09067 -30.84144 -27.56643 -27.12932 -24.24438 -21.92096 -21.15868 -19.53885 -16.80243 -16.27321 -16.00187 -15.60284 -15.15727 -14.41752 -13.81128 -13.62826 -12.95343 -12.69357 -12.62955 -12.38576 -12.12714 -11.56511 -11.42863 -11.06586 -10.98874 -10.63990 -10.42019 -10.06489 -9.78955 -9.05744 -8.32470 -7.90754 -7.58560 -6.39557 -5.00137 1.60453 1.90009 3.00018 3.08167 3.11423 3.87343 3.94016 4.09893 4.53189 4.59452 4.95639 5.32172 5.48385 5.55291 5.59253 5.71598 5.73953 5.90939 6.07465 6.14602 6.41973 6.56115 6.63753 6.90392 7.02829 7.16512 7.24852 7.52744 7.94335 8.69844 8.73105 10.21674 10.43117 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.060912 B = 0.007037 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.566684 B = 3978.230149 C = 4410.508818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.384 3.616 10 O -0.540 6.540 11 C -0.095 4.095 12 C -0.091 4.091 13 C -0.107 4.107 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.067 4.067 17 C 0.095 3.905 18 O -0.368 6.368 19 C 0.097 3.903 20 H 0.275 0.725 21 H 0.135 0.865 22 H 0.117 0.883 23 H 0.128 0.872 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.158 -7.517 -0.723 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.280 3.720 10 O -0.430 6.430 11 C -0.096 4.096 12 C -0.109 4.109 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.086 4.086 17 C 0.019 3.981 18 O -0.287 6.287 19 C 0.020 3.980 20 H 0.087 0.913 21 H 0.153 0.847 22 H 0.135 0.865 23 H 0.145 0.855 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.393 -7.688 -0.606 10.017 hybrid contribution 0.617 0.997 -0.145 1.181 sum 7.010 -6.691 -0.751 9.720 Atomic orbital electron populations 1.69957 1.07597 1.28293 1.30253 1.26026 0.94679 1.01112 0.92725 0.86338 0.80458 0.80739 0.79261 1.19319 1.20070 1.18431 1.20951 0.94994 0.91529 1.46951 0.90635 1.18156 0.88487 0.85687 0.79645 1.90499 1.14991 1.88323 1.49188 1.21930 0.94278 0.97472 0.95899 1.21553 0.94215 0.97443 0.97685 1.20303 0.99129 0.90907 1.02202 1.20989 0.94825 0.95174 1.04194 1.20881 0.94732 0.95250 1.04052 1.20624 1.00444 0.89835 0.97667 1.21683 0.89505 0.86556 1.00367 1.89000 1.15069 1.43633 1.81018 1.21648 0.89659 0.86579 1.00090 0.91343 0.84682 0.86469 0.85457 0.88866 0.91023 0.89162 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.77 11.73 55.57 0.65 -20.12 15 2 C 0.08 2.07 5.50 -17.31 -0.10 1.97 15 3 Si 0.91 18.82 29.56 -169.99 -5.03 13.80 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.51 -13.84 8.86 -37.43 -0.33 -14.17 15 8 H 0.08 1.83 6.02 -52.49 -0.32 1.51 15 9 C 0.38 10.78 6.92 -34.30 -0.24 10.54 15 10 O -0.54 -17.05 14.90 5.13 0.08 -16.97 15 11 C -0.09 -2.22 5.89 -104.82 -0.62 -2.83 15 12 C -0.09 -1.80 9.44 -39.12 -0.37 -2.17 15 13 C -0.11 -1.81 10.03 -39.70 -0.40 -2.21 15 14 C -0.15 -2.56 6.33 -104.19 -0.66 -3.22 15 15 C -0.15 -2.72 6.31 -104.42 -0.66 -3.38 15 16 C -0.07 -1.44 9.59 -39.22 -0.38 -1.82 15 17 C 0.10 1.43 7.63 36.21 0.28 1.71 15 18 O -0.37 -5.70 11.72 -35.23 -0.41 -6.12 15 19 C 0.10 1.34 7.63 36.22 0.28 1.61 15 20 H 0.28 6.97 8.29 -40.82 -0.34 6.64 15 21 H 0.14 2.54 6.20 -52.49 -0.33 2.21 15 22 H 0.12 1.57 8.06 -52.48 -0.42 1.15 15 23 H 0.13 2.77 7.66 -52.49 -0.40 2.37 15 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 242.15 15.07 3.65 3.65 Total: -1.00 -31.87 242.15 -6.54 -38.41 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.29 Total: 1.31 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.19 Total: -13.96 kcal Atomic # 7 Polarization: -20.77 SS G_CDS: 0.65 Total: -20.12 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.34 Total: -23.09 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.87 -6.54 -38.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082579567.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.525 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds