Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86798 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99560 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46680 * 149.99808 * 3 2 1 7 7 C 1.40350 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.41802 * 119.99813 * 0.27999 * 7 2 1 10 10 O 1.21763 * 120.00650 * 359.72091 * 9 7 2 11 11 C 1.47824 * 119.99468 * 179.72209 * 9 7 2 12 12 C 1.39765 * 120.14723 * 359.72733 * 11 9 7 13 13 C 1.37929 * 119.88109 * 179.73880 * 12 11 9 14 14 C 1.38218 * 120.12158 * 0.51889 * 13 12 11 15 15 C 1.38840 * 120.29161 * 359.75436 * 14 13 12 16 16 C 1.37632 * 120.19414 * 359.97438 * 15 14 13 17 17 C 1.51115 * 107.24099 * 179.97438 * 15 14 13 18 18 O 1.43928 * 105.95841 * 17.72353 * 17 15 14 19 19 C 1.43919 * 104.98559 * 331.46855 * 18 17 15 20 20 H 0.97005 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.05788 * 359.97438 * 12 11 9 22 22 H 1.08007 * 119.93652 * 180.25364 * 13 12 11 23 23 H 1.07999 * 120.09864 * 180.02562 * 16 15 14 24 24 H 1.09005 * 110.15260 * 136.84932 * 17 15 14 25 25 H 1.09002 * 110.15358 * 258.60007 * 17 15 14 26 26 H 1.08998 * 110.15233 * 147.66400 * 19 18 17 27 27 H 1.09003 * 110.15444 * 269.34012 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4401 0.7001 7 6 2.0071 -1.2155 0.0005 8 1 3.0871 -1.2154 0.0001 9 6 1.2980 -2.4435 -0.0049 10 8 0.0804 -2.4436 -0.0049 11 6 2.0372 -3.7236 -0.0105 12 6 3.4348 -3.7271 -0.0163 13 6 4.1190 -4.9248 -0.0161 14 6 3.4250 -6.1201 -0.0210 15 6 2.0366 -6.1237 -0.0211 16 6 1.3413 -4.9360 -0.0157 17 6 1.5925 -7.5682 -0.0278 18 8 2.7361 -8.3357 0.3901 19 6 3.8759 -7.5626 -0.0277 20 1 -0.4850 0.8401 -0.0004 21 1 3.9781 -2.7938 -0.0170 22 1 5.1991 -4.9285 -0.0163 23 1 0.2613 -4.9407 -0.0154 24 1 0.7685 -7.7109 0.6714 25 1 1.2889 -7.8631 -1.0322 26 1 4.7006 -7.7015 0.6714 27 1 4.1818 -7.8569 -1.0317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082579567.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -79.460024 kcal Electronic energy + Delta-G solvation = -13796.722409 eV Core-core repulsion = 11290.546287 eV Total energy + Delta-G solvation = -2506.176121 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.53069 -39.26864 -37.53055 -34.84789 -32.54029 -32.35944 -29.20262 -28.72703 -25.76832 -23.49937 -22.54605 -21.32617 -18.60625 -17.85745 -17.22285 -17.20379 -16.60284 -16.12055 -15.25915 -15.17394 -14.55061 -14.42333 -14.28116 -13.78831 -13.48425 -13.31287 -13.08089 -12.71478 -12.55936 -12.34943 -12.06137 -11.69069 -11.06719 -10.97473 -9.81927 -9.69041 -9.41928 -8.39706 -7.13862 0.04058 0.40087 1.37351 1.37738 1.55311 2.13008 2.19035 2.75932 2.94769 3.25892 3.66420 3.68404 4.01064 4.20327 4.41233 4.42825 4.49188 4.57367 4.61140 4.77826 4.94891 5.08233 5.14310 5.29368 5.39445 5.65888 5.71200 5.90223 6.02626 6.64377 6.72564 8.18287 8.43694 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.060912 B = 0.007037 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.566684 B = 3978.230149 C = 4410.508818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.243 1.243 7 C -0.538 4.538 8 H 0.100 0.900 9 C 0.358 3.642 10 O -0.599 6.599 11 C -0.138 4.138 12 C -0.093 4.093 13 C -0.095 4.095 14 C -0.141 4.141 15 C -0.157 4.157 16 C -0.086 4.086 17 C 0.098 3.902 18 O -0.376 6.376 19 C 0.097 3.903 20 H 0.283 0.717 21 H 0.142 0.858 22 H 0.165 0.835 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -8.299 -0.845 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.118 0.882 9 C 0.258 3.742 10 O -0.494 6.494 11 C -0.139 4.139 12 C -0.111 4.111 13 C -0.113 4.113 14 C -0.142 4.142 15 C -0.157 4.157 16 C -0.105 4.105 17 C 0.022 3.978 18 O -0.295 6.295 19 C 0.021 3.979 20 H 0.094 0.906 21 H 0.160 0.840 22 H 0.182 0.818 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.138 0.862 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.790 -8.497 -0.729 12.984 hybrid contribution -0.399 1.101 -0.111 1.176 sum 9.391 -7.396 -0.839 11.983 Atomic orbital electron populations 1.70110 1.10136 1.30066 1.31225 1.27357 0.95532 1.05805 0.91159 0.84993 0.79110 0.74310 0.79882 1.18163 1.19386 1.16568 1.21491 0.96348 0.92018 1.46995 0.88243 1.18916 0.88266 0.88359 0.78614 1.90434 1.17234 1.89665 1.52020 1.21572 0.95970 0.96020 1.00353 1.21643 0.92552 0.99369 0.97494 1.20685 1.01306 0.89433 0.99867 1.21577 0.94118 0.97224 1.01237 1.21177 0.95834 0.95709 1.02986 1.20485 0.99547 0.90999 0.99470 1.21767 0.89838 0.84311 1.01899 1.89005 1.15478 1.43646 1.81380 1.21929 0.89662 0.83659 1.02607 0.90617 0.83997 0.81772 0.87833 0.87985 0.88979 0.86205 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.67 11.73 21.89 0.26 -46.41 15 2 C 0.02 1.11 5.50 85.40 0.47 1.58 15 3 Si 1.00 38.53 29.56 68.60 2.03 40.56 15 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 6 H -0.24 -8.59 7.11 99.48 0.71 -7.89 15 7 C -0.54 -29.91 8.86 23.67 0.21 -29.70 15 8 H 0.10 4.82 6.02 -2.91 -0.02 4.80 15 9 C 0.36 21.34 6.92 25.69 0.18 21.51 15 10 O -0.60 -40.81 14.90 -4.55 -0.07 -40.88 15 11 C -0.14 -6.74 5.89 -20.00 -0.12 -6.85 15 12 C -0.09 -3.60 9.44 22.57 0.21 -3.39 15 13 C -0.10 -2.88 10.03 22.19 0.22 -2.66 15 14 C -0.14 -4.29 6.33 -19.58 -0.12 -4.42 15 15 C -0.16 -5.57 6.31 -19.73 -0.12 -5.70 15 16 C -0.09 -3.88 9.59 22.50 0.22 -3.66 15 17 C 0.10 2.74 7.63 71.37 0.54 3.28 15 18 O -0.38 -10.22 11.72 -148.98 -1.75 -11.97 15 19 C 0.10 2.20 7.63 71.38 0.54 2.74 15 20 H 0.28 14.95 8.29 -92.70 -0.77 14.18 15 21 H 0.14 5.17 6.20 -2.91 -0.02 5.15 15 22 H 0.16 3.44 8.06 -2.91 -0.02 3.42 15 23 H 0.10 4.96 7.66 -2.91 -0.02 4.94 15 24 H 0.10 2.67 8.14 -2.38 -0.02 2.65 15 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 Total: -1.00 -74.54 242.15 3.90 -70.65 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.19 Total: 15.31 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 2.23 Total: -27.26 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.26 Total: -46.41 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.81 Total: -52.85 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -74.54 3.90 -70.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082579567.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.812 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds