Wall clock time and date at job start Mon Mar 30 2020 02:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48500 * 109.46974 * 274.98531 * 3 2 1 5 5 H 1.48498 * 109.47409 * 34.98538 * 3 2 1 6 6 H 1.48502 * 109.47168 * 154.98743 * 3 2 1 7 7 C 1.40454 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00290 * 186.25459 * 7 2 1 9 9 C 1.41029 * 120.00129 * 6.25841 * 7 2 1 10 10 O 1.21430 * 120.00095 * 353.74338 * 9 7 2 11 11 C 1.50705 * 119.99876 * 174.01235 * 9 7 2 12 12 H 1.08993 * 109.64464 * 330.15802 * 11 9 7 13 13 C 1.53881 * 109.64278 * 90.45151 * 11 9 7 14 14 C 1.55045 * 106.62134 * 167.03077 * 13 11 9 15 15 S 1.83291 * 102.56819 * 317.56864 * 14 13 11 16 16 O 1.42096 * 109.35100 * 269.81382 * 15 14 13 17 17 O 1.42098 * 109.47594 * 136.64883 * 15 14 13 18 18 C 1.54160 * 109.64482 * 209.72747 * 11 9 7 19 19 H 0.97003 * 120.00093 * 0.02562 * 1 2 3 20 20 H 1.09002 * 110.02539 * 286.32313 * 13 11 9 21 21 H 1.09002 * 110.02634 * 47.74342 * 13 11 9 22 22 H 1.08999 * 110.79141 * 199.29806 * 14 13 11 23 23 H 1.09004 * 110.95313 * 75.91053 * 14 13 11 24 24 H 1.08998 * 110.32131 * 331.13769 * 18 11 9 25 25 H 1.08999 * 110.32447 * 93.33919 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4933 2.6200 0.8027 6 1 3.5855 1.4121 0.5920 7 6 2.0074 -1.2164 0.0005 8 1 3.0826 -1.2192 0.1024 9 6 1.3086 -2.4341 -0.1321 10 8 0.0943 -2.4404 -0.1324 11 6 2.0688 -3.7284 -0.2672 12 1 3.0244 -3.5425 -0.7574 13 6 2.3144 -4.3320 1.1268 14 6 2.7903 -5.7903 0.9011 15 16 1.6686 -6.3751 -0.4254 16 8 0.5113 -6.9567 0.1591 17 8 2.4154 -7.1024 -1.3910 18 6 1.2444 -4.7291 -1.1012 19 1 -0.4850 0.8401 -0.0004 20 1 3.0847 -3.7645 1.6489 21 1 1.3898 -4.3263 1.7042 22 1 2.6615 -6.3838 1.8062 23 1 3.8281 -5.8146 0.5687 24 1 0.1787 -4.5340 -0.9814 25 1 1.5255 -4.6677 -2.1525 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082998887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:17 Heat of formation + Delta-G solvation = -149.085174 kcal Electronic energy + Delta-G solvation = -12996.587654 eV Core-core repulsion = 10487.003216 eV Total energy + Delta-G solvation = -2509.584438 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 218.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.54044 -38.03825 -37.06996 -36.23174 -34.69694 -30.84052 -29.35955 -26.22008 -23.40549 -20.85057 -19.75503 -18.65736 -17.66018 -17.60088 -16.75034 -16.58459 -15.59917 -15.25735 -14.91122 -14.63271 -14.15077 -13.55231 -13.26127 -13.17816 -13.09458 -12.92223 -12.80271 -12.56224 -12.24741 -12.03663 -11.82613 -11.56810 -11.15413 -10.96997 -9.52988 -8.31183 -7.09096 -0.81804 1.35343 1.40423 1.56305 1.64566 2.16720 2.21721 2.68688 3.11710 3.31231 3.61556 3.81306 4.04076 4.08235 4.20056 4.59011 4.74466 4.88690 4.92931 5.18041 5.20716 5.24566 5.99706 6.73438 6.81110 8.27055 8.51101 Molecular weight = 218.04amu Principal moments of inertia in cm(-1) A = 0.065775 B = 0.007971 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.592333 B = 3511.952448 C = 3651.331407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.026 3.974 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.243 1.243 7 C -0.559 4.559 8 H 0.096 0.904 9 C 0.350 3.650 10 O -0.593 6.593 11 C -0.125 4.125 12 H 0.116 0.884 13 C -0.103 4.103 14 C -0.549 4.549 15 S 2.402 3.598 16 O -0.985 6.985 17 O -0.973 6.973 18 C -0.577 4.577 19 H 0.280 0.720 20 H 0.118 0.882 21 H 0.066 0.934 22 H 0.162 0.838 23 H 0.171 0.829 24 H 0.116 0.884 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 -4.760 1.669 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.165 1.165 7 C -0.590 4.590 8 H 0.114 0.886 9 C 0.247 3.753 10 O -0.486 6.486 11 C -0.146 4.146 12 H 0.134 0.866 13 C -0.142 4.142 14 C -0.682 4.682 15 S 2.590 3.410 16 O -0.982 6.982 17 O -0.970 6.970 18 C -0.707 4.707 19 H 0.091 0.909 20 H 0.136 0.864 21 H 0.085 0.915 22 H 0.180 0.820 23 H 0.189 0.811 24 H 0.134 0.866 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.121 -5.699 1.367 10.015 hybrid contribution 0.007 1.549 -0.014 1.549 sum 8.127 -4.150 1.352 9.225 Atomic orbital electron populations 1.70093 1.09976 1.29758 1.32200 1.27248 0.95352 1.05615 0.91091 0.85096 0.79412 0.75183 0.79303 1.18871 1.19809 1.16546 1.21415 0.96776 0.92651 1.48184 0.88603 1.19997 0.88524 0.89328 0.77409 1.90376 1.17819 1.88752 1.51622 1.22105 1.00417 0.96379 0.95712 0.86581 1.22068 1.03347 0.92772 0.96008 1.30420 1.15473 1.05163 1.17117 1.08534 0.76732 0.77387 0.78301 1.93527 1.50061 1.76353 1.78248 1.93523 1.72332 1.70287 1.60894 1.30386 1.10201 1.19285 1.10790 0.90927 0.86415 0.91491 0.81991 0.81118 0.86595 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.16 11.75 21.91 0.26 -44.90 15 2 C 0.03 1.34 5.50 85.43 0.47 1.81 15 3 Si 0.99 37.25 29.57 68.60 2.03 39.28 15 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 6 H -0.24 -8.32 7.11 99.48 0.71 -7.61 15 7 C -0.56 -28.60 9.19 23.49 0.22 -28.38 15 8 H 0.10 4.27 7.86 -2.91 -0.02 4.25 15 9 C 0.35 18.18 5.96 26.37 0.16 18.33 15 10 O -0.59 -36.64 14.25 -3.50 -0.05 -36.69 15 11 C -0.13 -4.64 2.84 -10.85 -0.03 -4.67 15 12 H 0.12 3.60 8.10 -2.39 -0.02 3.58 15 13 C -0.10 -3.03 5.79 31.59 0.18 -2.84 15 14 C -0.55 -11.39 7.31 72.68 0.53 -10.85 15 15 S 2.40 70.09 6.10 -56.49 -0.34 69.74 15 16 O -0.98 -36.58 18.14 -127.47 -2.31 -38.89 15 17 O -0.97 -31.94 18.15 -127.47 -2.31 -34.25 15 18 C -0.58 -20.23 6.69 72.37 0.48 -19.75 15 19 H 0.28 14.40 8.29 -92.71 -0.77 13.64 15 20 H 0.12 3.00 8.14 -2.39 -0.02 2.98 15 21 H 0.07 2.23 8.11 -2.39 -0.02 2.21 15 22 H 0.16 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.17 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.12 4.88 6.91 -2.39 -0.02 4.86 15 25 H 0.14 4.38 8.14 -2.39 -0.02 4.37 15 Total: -1.00 -77.57 234.37 0.47 -77.10 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.20 Total: 14.97 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 2.01 Total: -46.35 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.26 Total: -44.90 kcal Atomic # 8 Polarization: -105.16 SS G_CDS: -4.68 Total: -109.84 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: 70.09 SS G_CDS: -0.34 Total: 69.74 kcal Total: -77.57 0.47 -77.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082998887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.989 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds