Wall clock time and date at job start Mon Mar 30 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00013 * 2 1 4 4 H 1.08003 * 120.00038 * 202.38623 * 3 2 1 5 5 C 1.38815 * 120.00397 * 22.37579 * 3 2 1 6 6 N 1.31628 * 119.99554 * 11.34190 * 5 3 2 7 7 Si 1.86797 * 120.00281 * 191.33402 * 5 3 2 8 8 H 1.48499 * 109.47063 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46879 * 120.00291 * 7 5 3 10 10 H 1.48498 * 109.47114 * 240.00299 * 7 5 3 11 11 C 1.46503 * 119.99758 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47350 * 270.00153 * 11 2 1 13 13 H 1.09000 * 112.50351 * 45.32834 * 12 11 2 14 14 C 1.52876 * 113.21931 * 175.20113 * 12 11 2 15 15 C 1.51429 * 84.73069 * 115.23648 * 14 12 11 16 16 C 1.38947 * 145.52838 * 180.02562 * 15 14 12 17 17 C 1.37978 * 120.32345 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.17604 * 359.97438 * 17 16 15 19 19 C 1.38178 * 119.74955 * 0.02562 * 18 17 16 20 20 C 1.38233 * 120.12608 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47095 * 274.21524 * 1 2 3 22 22 H 1.09002 * 109.46722 * 34.21631 * 1 2 3 23 23 H 1.09000 * 109.47137 * 154.21068 * 1 2 3 24 24 H 0.96992 * 119.99566 * 179.97438 * 6 5 3 25 25 H 1.08993 * 109.46611 * 150.00156 * 11 2 1 26 26 H 1.08994 * 109.46926 * 30.00380 * 11 2 1 27 27 H 1.09005 * 113.99091 * 229.18094 * 14 12 11 28 28 H 1.09003 * 113.99418 * 1.13514 * 14 12 11 29 29 H 1.07997 * 119.83656 * 359.94928 * 16 15 14 30 30 H 1.07997 * 119.91139 * 180.27357 * 17 16 15 31 31 H 1.08007 * 120.12317 * 180.02562 * 18 17 16 32 32 H 1.07997 * 119.93441 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2211 -0.3562 5 6 1.5341 2.3428 0.4576 6 7 0.3846 2.2688 1.0946 7 14 2.3370 4.0047 0.1696 8 1 3.6139 3.8168 -0.5648 9 1 1.4270 4.8618 -0.6318 10 1 2.6082 4.6565 1.4761 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4432 13 1 1.5681 -1.6100 2.0725 14 6 3.1111 -3.0857 1.5454 15 6 4.2798 -2.3277 2.1390 16 6 5.5603 -2.4287 2.6689 17 6 6.2279 -1.2998 3.0975 18 6 5.6268 -0.0587 3.0018 19 6 4.3535 0.0477 2.4756 20 6 3.6837 -1.0826 2.0460 21 1 -0.3633 0.0755 1.0249 22 1 -0.3633 0.8498 -0.5779 23 1 -0.3633 -0.9253 -0.4471 24 1 -0.0453 3.0772 1.4147 25 1 3.1499 -1.1386 -0.5133 26 1 1.6084 -2.0285 -0.5130 27 1 2.6196 -3.7615 2.2454 28 1 3.3233 -3.5482 0.5814 29 1 6.0351 -3.3956 2.7462 30 1 7.2247 -1.3854 3.5042 31 1 6.1503 0.8245 3.3371 32 1 3.8808 1.0158 2.3999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085574471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:35 Heat of formation + Delta-G solvation = 69.046085 kcal Electronic energy + Delta-G solvation = -14432.227926 eV Core-core repulsion = 12166.043269 eV Total energy + Delta-G solvation = -2266.184657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36584 -37.65936 -36.07933 -33.11046 -31.50939 -29.19615 -27.96602 -27.13351 -24.54445 -23.15900 -21.87702 -20.45452 -18.78381 -17.43545 -16.97802 -16.16365 -15.78762 -15.34813 -15.17257 -15.12636 -14.20313 -13.83448 -13.73656 -13.23046 -12.98210 -12.90764 -12.70456 -12.41318 -12.33755 -12.24314 -12.00258 -11.76141 -11.53014 -10.95154 -10.61915 -9.62952 -9.41414 -8.73819 -7.80978 -5.26632 0.51246 0.60537 1.40826 1.42630 1.52244 2.49856 2.95573 3.33216 3.42723 3.60042 3.71369 4.09131 4.26275 4.36115 4.36706 4.62441 4.74655 4.78938 4.88344 4.90495 4.99264 5.06950 5.15173 5.34251 5.37463 5.45244 5.58953 5.64336 5.70041 5.75012 6.05831 6.24425 6.35424 7.18155 7.90163 8.32744 9.23062 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.010897 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.537937 B = 2568.831447 C = 3330.455131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.617 5.617 3 C -0.236 4.236 4 H 0.060 0.940 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.955 3.045 8 H -0.269 1.269 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.165 3.835 12 C -0.071 4.071 13 H 0.061 0.939 14 C -0.051 4.051 15 C -0.147 4.147 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.112 4.112 20 C -0.127 4.127 21 H 0.001 0.999 22 H 0.017 0.983 23 H 0.034 0.966 24 H 0.245 0.755 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.588 -10.508 1.968 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.339 5.339 3 C -0.367 4.367 4 H 0.078 0.922 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.784 3.216 8 H -0.194 1.194 9 H -0.217 1.217 10 H -0.221 1.221 11 C 0.039 3.961 12 C -0.092 4.092 13 H 0.079 0.921 14 C -0.088 4.088 15 C -0.147 4.147 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.130 4.130 20 C -0.127 4.127 21 H 0.019 0.981 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.499 -10.374 1.993 13.558 hybrid contribution -0.076 1.720 0.174 1.731 sum 8.423 -8.654 2.167 12.269 Atomic orbital electron populations 1.20553 0.82574 0.96162 0.97459 1.44224 1.02209 1.01763 1.85724 1.19326 0.97316 0.86411 1.33626 0.92207 1.25639 0.98534 1.01270 0.99328 1.70229 1.19241 1.26963 1.42302 0.85367 0.78186 0.81008 0.77033 1.19364 1.21711 1.22066 1.20910 0.95484 0.87136 0.92619 1.22021 0.94423 0.93646 0.99091 0.92107 1.21777 0.90393 0.94973 1.01702 1.22774 0.95626 0.96480 0.99783 1.20842 0.93106 0.99752 0.98750 1.21243 1.00874 0.91542 1.00671 1.21242 0.94078 0.99224 1.00246 1.20450 0.95545 0.97506 0.99539 1.21887 0.98611 0.94331 0.97838 0.98115 0.96392 0.94780 0.94559 0.94180 0.90963 0.87424 0.86979 0.83807 0.82773 0.84524 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 9.01 127.77 1.15 10.08 16 2 N -0.62 -31.54 2.93 -726.93 -2.13 -33.67 16 3 C -0.24 -13.26 9.67 84.03 0.81 -12.45 16 4 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 5 C -0.05 -3.07 5.13 84.86 0.44 -2.64 16 6 N -0.94 -56.92 10.59 21.65 0.23 -56.69 16 7 Si 0.95 46.62 29.57 68.60 2.03 48.64 16 8 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 9 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 11 C 0.16 6.74 5.40 86.38 0.47 7.20 16 12 C -0.07 -2.71 3.96 -13.93 -0.06 -2.77 16 13 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 14 C -0.05 -1.41 8.01 30.04 0.24 -1.17 16 15 C -0.15 -4.74 7.32 -21.79 -0.16 -4.90 16 16 C -0.11 -2.92 10.05 22.38 0.22 -2.70 16 17 C -0.13 -3.39 10.03 22.21 0.22 -3.17 16 18 C -0.13 -4.26 10.06 22.25 0.22 -4.04 16 19 C -0.11 -4.67 10.04 22.25 0.22 -4.45 16 20 C -0.13 -5.12 7.00 -19.82 -0.14 -5.26 16 21 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 22 H 0.02 0.96 7.19 -2.39 -0.02 0.94 16 23 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 24 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.04 1.67 7.92 -2.39 -0.02 1.65 16 26 H 0.07 2.51 7.86 -2.39 -0.02 2.49 16 27 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.11 2.55 7.99 -2.39 -0.02 2.53 16 29 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.09 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -66.84 270.96 4.86 -61.98 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.08 Total: 5.99 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.65 Total: -26.25 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -1.90 Total: -90.36 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -66.84 4.86 -61.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085574471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.025 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds