Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99906 * 2 1 4 4 H 1.48508 * 109.47037 * 239.99740 * 3 2 1 5 5 H 1.48501 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47344 * 120.00266 * 3 2 1 7 7 C 1.37882 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99714 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99821 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47175 * 299.99843 * 9 7 2 11 11 O 1.42897 * 109.47183 * 60.00046 * 9 7 2 12 12 C 1.50700 * 109.46735 * 179.97438 * 9 7 2 13 13 C 1.33400 * 125.19524 * 100.00420 * 12 9 7 14 14 C 1.38485 * 114.91011 * 179.97438 * 13 12 9 15 15 Cl 1.73602 * 122.54665 * 179.97438 * 14 13 12 16 16 C 1.33439 * 114.90128 * 359.97438 * 14 13 12 17 17 S 1.75877 * 125.19614 * 279.97246 * 12 9 7 18 18 H 0.97000 * 119.99944 * 0.02562 * 1 2 3 19 19 H 0.96698 * 114.00210 * 59.99767 * 11 9 7 20 20 H 1.07997 * 122.54677 * 0.23791 * 13 12 9 21 21 H 1.07995 * 125.20180 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2303 -3.6446 0.0005 13 6 2.5860 -4.3520 1.0741 14 6 3.5038 -5.3601 0.8305 15 17 4.1030 -6.4006 2.0843 16 6 3.8923 -5.4709 -0.4413 17 16 3.0783 -4.2533 -1.4150 18 1 -0.4850 0.8400 -0.0004 19 1 0.9223 -2.5300 -1.9975 20 1 2.1854 -4.1564 2.0577 21 1 4.5987 -6.1971 -0.8154 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086334966.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -49.328776 kcal Electronic energy + Delta-G solvation = -10411.160044 eV Core-core repulsion = 8210.777439 eV Total energy + Delta-G solvation = -2200.382606 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.30099 -37.78728 -36.68951 -34.35094 -31.41212 -28.36519 -25.56798 -23.40968 -20.39002 -19.11605 -18.58225 -16.91962 -16.72544 -15.96335 -15.24661 -14.88363 -14.54337 -13.96949 -13.53584 -13.27097 -13.07139 -12.78481 -12.32230 -12.23121 -12.03363 -11.71521 -11.41028 -10.79930 -10.54402 -9.59034 -9.26843 -8.19027 -6.47062 -0.00164 0.41680 0.83403 1.41476 1.42898 1.50984 1.59399 1.67315 2.37907 3.06481 3.92438 4.16490 4.26122 4.53552 4.87138 5.08586 5.21870 5.50639 5.61367 5.92428 6.61094 7.19509 7.36341 8.84205 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.042342 B = 0.008536 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.127223 B = 3279.445499 C = 3464.865568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.579 4.579 8 H 0.060 0.940 9 C 0.289 3.711 10 H 0.046 0.954 11 O -0.569 6.569 12 C -0.169 4.169 13 C -0.167 4.167 14 C -0.045 4.045 15 Cl -0.051 7.051 16 C -0.222 4.222 17 S 0.163 5.837 18 H 0.266 0.734 19 H 0.356 0.644 20 H 0.139 0.861 21 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 -8.948 -1.072 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.617 4.617 8 H 0.078 0.922 9 C 0.230 3.770 10 H 0.064 0.936 11 O -0.373 6.373 12 C -0.287 4.287 13 C -0.197 4.197 14 C -0.085 4.085 15 Cl -0.023 7.023 16 C -0.358 4.358 17 S 0.426 5.574 18 H 0.075 0.925 19 H 0.202 0.798 20 H 0.157 0.843 21 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.498 -8.614 -2.026 11.599 hybrid contribution 0.592 0.504 1.495 1.685 sum 8.090 -8.111 -0.531 11.468 Atomic orbital electron populations 1.70177 1.07569 1.27941 1.47421 1.25877 0.95532 1.02810 0.93005 0.85573 0.78401 0.78217 0.79230 1.18984 1.20682 1.19458 1.21766 0.93374 0.91302 1.55214 0.92208 1.17825 0.85787 0.87500 0.85899 0.93590 1.86585 1.38675 1.96240 1.15794 1.25937 1.03666 1.01954 0.97187 1.19836 1.01911 0.97502 1.00412 1.19708 1.01355 0.97097 0.90355 1.98323 1.86870 1.65111 1.51976 1.25778 1.08474 1.06309 0.95284 1.83925 1.37563 1.26147 1.09814 0.92526 0.79843 0.84289 0.78215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.84 12.84 21.45 0.28 -51.56 14 2 C 0.03 1.70 5.40 84.66 0.46 2.16 14 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 14 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 14 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 14 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 14 7 C -0.58 -31.00 8.75 25.60 0.22 -30.78 14 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 14 9 C 0.29 14.64 3.27 29.10 0.10 14.73 14 10 H 0.05 2.59 8.12 -2.38 -0.02 2.58 14 11 O -0.57 -29.03 12.67 -148.98 -1.89 -30.92 14 12 C -0.17 -7.03 5.41 24.59 0.13 -6.90 14 13 C -0.17 -6.35 9.93 21.23 0.21 -6.14 14 14 C -0.05 -1.44 6.27 21.24 0.13 -1.31 14 15 Cl -0.05 -1.39 29.11 -2.72 -0.08 -1.47 14 16 C -0.22 -6.28 11.08 66.73 0.74 -5.55 14 17 S 0.16 5.31 22.64 -56.49 -1.28 4.03 14 18 H 0.27 14.55 8.31 -92.71 -0.77 13.78 14 19 H 0.36 16.00 8.44 -74.06 -0.63 15.38 14 20 H 0.14 5.23 8.06 -2.91 -0.02 5.21 14 21 H 0.20 4.17 8.06 -2.91 -0.02 4.14 14 Total: -1.00 -59.66 226.95 1.69 -57.97 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.64 Total: 11.48 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 1.99 Total: -33.78 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.28 Total: -51.56 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.89 Total: -30.92 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.28 Total: 4.03 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -59.66 1.69 -57.97 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086334966.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.643 kcal (2) G-P(sol) polarization free energy of solvation -59.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds