Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39768 * 120.09138 * 85.79482 * 3 2 1 5 5 C 1.37719 * 119.90276 * 179.97438 * 4 3 2 6 6 C 1.38980 * 120.09183 * 359.73967 * 5 4 3 7 7 O 1.35760 * 119.90468 * 180.27770 * 6 5 4 8 8 C 1.38945 * 120.19215 * 0.51345 * 6 5 4 9 9 C 1.50701 * 119.95193 * 179.76542 * 8 6 5 10 10 H 1.08999 * 109.47538 * 39.72412 * 9 8 6 11 11 N 1.46903 * 109.47043 * 159.72461 * 9 8 6 12 12 C 1.50701 * 109.47161 * 279.72010 * 9 8 6 13 13 H 1.07998 * 119.99866 * 356.30313 * 12 9 8 14 14 C 1.37878 * 119.99964 * 176.29994 * 12 9 8 15 15 N 1.31516 * 120.00125 * 353.14828 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 173.14710 * 14 12 9 17 17 H 1.48497 * 109.47066 * 265.18334 * 16 14 12 18 18 H 1.48496 * 109.47083 * 25.18590 * 16 14 12 19 19 H 1.48503 * 109.46631 * 145.18750 * 16 14 12 20 20 C 1.37754 * 120.09293 * 359.48996 * 8 6 5 21 21 H 1.07996 * 120.04913 * 359.94795 * 4 3 2 22 22 H 1.07993 * 119.95022 * 180.02562 * 5 4 3 23 23 H 0.96701 * 113.99955 * 270.23089 * 7 6 5 24 24 H 1.00902 * 110.99910 * 66.75530 * 11 9 8 25 25 H 1.00891 * 111.00156 * 190.71315 * 11 9 8 26 26 H 0.96995 * 120.00126 * 179.97438 * 15 14 12 27 27 H 1.07996 * 120.04616 * 180.27879 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.0877 -1.2061 5 6 4.6460 -0.0862 -1.2016 6 6 5.3389 0.0084 -0.0005 7 8 6.6964 0.0152 -0.0009 8 6 4.6461 0.0911 1.2011 9 6 5.4029 0.1882 2.5007 10 1 6.2656 0.8417 2.3710 11 7 4.5229 0.7396 3.5398 12 6 5.8697 -1.1838 2.9140 13 1 5.5906 -2.0479 2.3293 14 6 6.6530 -1.3358 4.0384 15 7 7.1048 -0.2764 4.6733 16 14 7.0724 -3.0468 4.6600 17 1 6.1013 -3.4433 5.7112 18 1 7.0053 -4.0127 3.5342 19 1 8.4441 -3.0441 5.2290 20 6 3.2686 0.0903 1.2057 21 1 2.7312 -0.1575 -2.1401 22 1 5.1883 -0.1541 -2.1330 23 1 7.0942 -0.8640 0.0622 24 1 3.7742 0.0989 3.7569 25 1 5.0468 0.9776 4.3684 26 1 7.6555 -0.3834 5.4645 27 1 2.7309 0.1591 2.1398 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095707056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = 4.302058 kcal Electronic energy + Delta-G solvation = -13898.055318 eV Core-core repulsion = 11427.804144 eV Total energy + Delta-G solvation = -2470.251174 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.52959 -36.86534 -35.60846 -34.75185 -31.83854 -29.98687 -29.33749 -26.12033 -23.30660 -23.02723 -20.57775 -18.00759 -17.81836 -16.66144 -15.68529 -14.95306 -14.81540 -14.05624 -13.83914 -13.67135 -13.18571 -12.92120 -12.77799 -12.27353 -12.13941 -11.62992 -11.36019 -11.18809 -10.99451 -10.90496 -10.22797 -10.12440 -9.54156 -8.79263 -8.42594 -8.05249 -7.38129 -6.22292 -4.36973 1.12023 1.80174 2.91918 3.14879 3.21601 3.24343 3.27353 4.15532 4.22383 4.27654 4.77389 5.02198 5.25468 5.29497 5.62466 5.91322 6.16017 6.32898 6.44816 6.52096 6.76073 6.93375 7.16078 7.55790 7.61211 7.74037 7.94995 8.22226 8.56421 8.72033 8.90603 9.33069 10.78220 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.008863 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.071793 B = 3158.466606 C = 3494.659511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.271 3.729 3 C -0.058 4.058 4 C -0.080 4.080 5 C -0.156 4.156 6 C 0.139 3.861 7 O -0.490 6.490 8 C -0.057 4.057 9 C 0.242 3.758 10 H 0.066 0.934 11 N -0.851 5.851 12 C -0.549 4.549 13 H 0.055 0.945 14 C 0.071 3.929 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.285 1.285 20 C -0.045 4.045 21 H 0.125 0.875 22 H 0.129 0.871 23 H 0.395 0.605 24 H 0.315 0.685 25 H 0.350 0.650 26 H 0.266 0.734 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -1.275 -7.566 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.044 4.044 3 C -0.061 4.061 4 C -0.100 4.100 5 C -0.175 4.175 6 C 0.093 3.907 7 O -0.301 6.301 8 C -0.058 4.058 9 C 0.132 3.868 10 H 0.083 0.917 11 N -0.379 5.379 12 C -0.589 4.589 13 H 0.074 0.926 14 C -0.133 4.133 15 N -0.522 5.522 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.211 1.211 20 C -0.066 4.066 21 H 0.143 0.857 22 H 0.147 0.853 23 H 0.252 0.748 24 H 0.124 0.876 25 H 0.164 0.836 26 H 0.076 0.924 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.560 -0.004 -7.977 8.735 hybrid contribution 1.179 -2.342 1.036 2.819 sum -2.381 -2.345 -6.941 7.704 Atomic orbital electron populations 1.81175 1.12248 1.10396 1.08202 1.25840 0.92760 0.92792 0.92963 1.16088 0.83937 1.10747 0.95345 1.20738 0.93580 0.99604 0.96109 1.21208 0.93808 1.04429 0.98034 1.18592 0.83561 0.97171 0.91410 1.84650 1.15420 1.34227 1.95839 1.20846 0.93164 0.94887 0.96923 1.17912 0.90279 0.94782 0.83846 0.91673 1.59497 1.15459 1.47201 1.15743 1.21664 1.33163 0.93143 1.10917 0.92648 1.25000 0.94571 0.96989 0.96711 1.69870 1.34271 1.28628 1.19473 0.86538 0.77768 0.84261 0.79176 1.20627 1.19810 1.21110 1.20964 0.93778 0.95654 0.96216 0.85712 0.85266 0.74768 0.87561 0.83646 0.92403 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.70 18.54 41.84 0.78 -6.92 15 2 C 0.27 4.32 15.33 -22.47 -0.34 3.98 15 3 C -0.06 -0.89 5.74 -106.84 -0.61 -1.50 15 4 C -0.08 -1.08 9.75 -39.20 -0.38 -1.46 15 5 C -0.16 -2.21 9.97 -39.50 -0.39 -2.60 15 6 C 0.14 2.41 6.68 -39.04 -0.26 2.15 15 7 O -0.49 -8.46 12.71 -18.99 -0.24 -8.70 15 8 C -0.06 -1.10 5.03 -104.54 -0.53 -1.63 15 9 C 0.24 5.49 2.47 -70.01 -0.17 5.31 15 10 H 0.07 1.70 7.83 -51.93 -0.41 1.29 15 11 N -0.85 -18.51 8.46 -6.65 -0.06 -18.56 15 12 C -0.55 -13.31 8.61 -34.44 -0.30 -13.60 15 13 H 0.06 1.34 7.75 -52.49 -0.41 0.93 15 14 C 0.07 1.78 5.36 -17.82 -0.10 1.68 15 15 N -0.88 -23.04 12.16 55.43 0.67 -22.37 15 16 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 15 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 20 C -0.05 -0.79 8.97 -39.20 -0.35 -1.15 15 21 H 0.12 1.35 8.06 -52.49 -0.42 0.92 15 22 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 23 H 0.39 5.52 9.06 45.56 0.41 5.93 15 24 H 0.31 6.49 7.62 -39.29 -0.30 6.19 15 25 H 0.35 8.18 7.83 -39.30 -0.31 7.87 15 26 H 0.27 6.67 8.31 -40.82 -0.34 6.34 15 27 H 0.14 2.37 6.41 -52.49 -0.34 2.03 15 LS Contribution 251.56 15.07 3.79 3.79 Total: -1.00 -26.81 251.56 -4.84 -31.65 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -1.32 Total: 15.39 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.44 Total: -8.83 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 1.39 Total: -47.85 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.24 Total: -8.70 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.81 -4.84 -31.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095707056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.954 kcal (2) G-P(sol) polarization free energy of solvation -26.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds