Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39768 * 120.09138 * 85.79482 * 3 2 1 5 5 C 1.37719 * 119.90276 * 179.97438 * 4 3 2 6 6 C 1.38980 * 120.09183 * 359.73967 * 5 4 3 7 7 O 1.35760 * 119.90468 * 180.27770 * 6 5 4 8 8 C 1.38945 * 120.19215 * 0.51345 * 6 5 4 9 9 C 1.50701 * 119.95193 * 179.76542 * 8 6 5 10 10 H 1.08999 * 109.47538 * 39.72412 * 9 8 6 11 11 N 1.46903 * 109.47043 * 159.72461 * 9 8 6 12 12 C 1.50701 * 109.47161 * 279.72010 * 9 8 6 13 13 H 1.07998 * 119.99866 * 356.30313 * 12 9 8 14 14 C 1.37878 * 119.99964 * 176.29994 * 12 9 8 15 15 N 1.31516 * 120.00125 * 353.14828 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 173.14710 * 14 12 9 17 17 H 1.48497 * 109.47066 * 265.18334 * 16 14 12 18 18 H 1.48496 * 109.47083 * 25.18590 * 16 14 12 19 19 H 1.48503 * 109.46631 * 145.18750 * 16 14 12 20 20 C 1.37754 * 120.09293 * 359.48996 * 8 6 5 21 21 H 1.07996 * 120.04913 * 359.94795 * 4 3 2 22 22 H 1.07993 * 119.95022 * 180.02562 * 5 4 3 23 23 H 0.96701 * 113.99955 * 270.23089 * 7 6 5 24 24 H 1.00902 * 110.99910 * 66.75530 * 11 9 8 25 25 H 1.00891 * 111.00156 * 190.71315 * 11 9 8 26 26 H 0.96995 * 120.00126 * 179.97438 * 15 14 12 27 27 H 1.07996 * 120.04616 * 180.27879 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.0877 -1.2061 5 6 4.6460 -0.0862 -1.2016 6 6 5.3389 0.0084 -0.0005 7 8 6.6964 0.0152 -0.0009 8 6 4.6461 0.0911 1.2011 9 6 5.4029 0.1882 2.5007 10 1 6.2656 0.8417 2.3710 11 7 4.5229 0.7396 3.5398 12 6 5.8697 -1.1838 2.9140 13 1 5.5906 -2.0479 2.3293 14 6 6.6530 -1.3358 4.0384 15 7 7.1048 -0.2764 4.6733 16 14 7.0724 -3.0468 4.6600 17 1 6.1013 -3.4433 5.7112 18 1 7.0053 -4.0127 3.5342 19 1 8.4441 -3.0441 5.2290 20 6 3.2686 0.0903 1.2057 21 1 2.7312 -0.1575 -2.1401 22 1 5.1883 -0.1541 -2.1330 23 1 7.0942 -0.8640 0.0622 24 1 3.7742 0.0989 3.7569 25 1 5.0468 0.9776 4.3684 26 1 7.6555 -0.3834 5.4645 27 1 2.7309 0.1591 2.1398 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095707056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = -14.896945 kcal Electronic energy + Delta-G solvation = -13898.887849 eV Core-core repulsion = 11427.804144 eV Total energy + Delta-G solvation = -2471.083705 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.84582 -38.17263 -37.02043 -36.36018 -33.61340 -31.27325 -30.81423 -27.94593 -24.87183 -24.32673 -22.02543 -19.36061 -19.17573 -18.53406 -17.05374 -16.56931 -16.30775 -15.67493 -15.07049 -14.97669 -14.68130 -14.49940 -14.14932 -13.83041 -13.48877 -13.18236 -12.90184 -12.74283 -12.61791 -12.52618 -11.90664 -11.79632 -11.01852 -10.67052 -9.71603 -9.45823 -9.15831 -8.10654 -6.32393 -0.14897 0.55558 1.40562 1.45140 1.52713 1.64816 1.94886 2.40318 2.93257 2.95818 3.11093 3.53977 4.04911 4.10551 4.24887 4.65812 4.79269 4.90813 5.07369 5.27619 5.40556 5.44936 5.67730 5.86245 5.87619 6.10299 6.47685 6.72078 6.85876 7.00323 7.08182 7.40936 8.87191 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.008863 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.071793 B = 3158.466606 C = 3494.659511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.288 3.712 3 C -0.057 4.057 4 C -0.056 4.056 5 C -0.142 4.142 6 C 0.130 3.870 7 O -0.504 6.504 8 C -0.091 4.091 9 C 0.248 3.752 10 H 0.022 0.978 11 N -0.843 5.843 12 C -0.550 4.550 13 H 0.054 0.946 14 C 0.027 3.973 15 N -0.914 5.914 16 Si 0.954 3.046 17 H -0.281 1.281 18 H -0.266 1.266 19 H -0.288 1.288 20 C -0.050 4.050 21 H 0.165 0.835 22 H 0.165 0.835 23 H 0.406 0.594 24 H 0.321 0.679 25 H 0.338 0.662 26 H 0.265 0.735 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -2.207 -9.510 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.026 4.026 3 C -0.060 4.060 4 C -0.076 4.076 5 C -0.161 4.161 6 C 0.083 3.917 7 O -0.317 6.317 8 C -0.092 4.092 9 C 0.138 3.862 10 H 0.040 0.960 11 N -0.370 5.370 12 C -0.590 4.590 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.553 5.553 16 Si 0.780 3.220 17 H -0.207 1.207 18 H -0.191 1.191 19 H -0.214 1.214 20 C -0.071 4.071 21 H 0.183 0.817 22 H 0.183 0.817 23 H 0.265 0.735 24 H 0.131 0.869 25 H 0.150 0.850 26 H 0.074 0.926 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.182 -0.950 -9.938 10.824 hybrid contribution 1.355 -2.024 1.571 2.898 sum -2.826 -2.974 -8.367 9.319 Atomic orbital electron populations 1.81204 1.12922 1.11298 1.08960 1.25764 0.92561 0.92030 0.92231 1.16053 0.83569 1.11006 0.95407 1.21180 0.93401 0.96300 0.96741 1.21485 0.94032 1.02611 0.97930 1.18843 0.83591 0.97253 0.91973 1.84616 1.15810 1.35427 1.95869 1.20603 0.93879 0.98535 0.96172 1.17628 0.89694 0.93049 0.85849 0.95991 1.59481 1.15207 1.47269 1.15050 1.21898 1.32514 0.93890 1.10666 0.92756 1.25675 0.94761 0.99868 0.97080 1.69982 1.35138 1.30301 1.19882 0.85611 0.77078 0.80712 0.78562 1.20749 1.19077 1.21403 1.20847 0.93114 0.96141 0.97010 0.81735 0.81750 0.73499 0.86866 0.84977 0.92605 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.29 18.54 19.01 0.35 -14.94 15 2 C 0.29 8.50 15.33 88.33 1.35 9.86 15 3 C -0.06 -1.61 5.74 -21.30 -0.12 -1.73 15 4 C -0.06 -1.27 9.75 22.52 0.22 -1.05 15 5 C -0.14 -3.47 9.97 22.32 0.22 -3.25 15 6 C 0.13 4.30 6.68 22.62 0.15 4.45 15 7 O -0.50 -17.06 12.71 -90.87 -1.15 -18.21 15 8 C -0.09 -3.49 5.03 -19.81 -0.10 -3.59 15 9 C 0.25 11.54 2.47 43.42 0.11 11.65 15 10 H 0.02 1.21 7.83 -2.39 -0.02 1.19 15 11 N -0.84 -37.70 8.46 -174.94 -1.48 -39.18 15 12 C -0.55 -26.92 8.61 25.60 0.22 -26.70 15 13 H 0.05 2.62 7.75 -2.91 -0.02 2.60 15 14 C 0.03 1.37 5.36 84.65 0.45 1.82 15 15 N -0.91 -48.70 12.16 21.45 0.26 -48.44 15 16 Si 0.95 40.26 29.54 68.60 2.03 42.29 15 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 19 H -0.29 -12.21 7.11 99.48 0.71 -11.50 15 20 C -0.05 -1.71 8.97 22.52 0.20 -1.51 15 21 H 0.17 2.53 8.06 -2.91 -0.02 2.51 15 22 H 0.16 2.91 8.06 -2.91 -0.02 2.89 15 23 H 0.41 11.13 9.06 -74.06 -0.67 10.45 15 24 H 0.32 13.51 7.62 -89.69 -0.68 12.83 15 25 H 0.34 16.38 7.83 -89.70 -0.70 15.68 15 26 H 0.26 13.56 8.31 -92.71 -0.77 12.79 15 27 H 0.13 4.46 6.41 -2.91 -0.02 4.44 15 Total: -1.00 -57.84 251.56 1.90 -55.94 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.81 Total: 32.59 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 2.71 Total: -10.06 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -0.87 Total: -102.55 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.15 Total: -18.21 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -57.84 1.90 -55.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095707056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.048 kcal (2) G-P(sol) polarization free energy of solvation -57.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds