Wall clock time and date at job start Mon Mar 30 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39784 * 120.09337 * 50.94423 * 3 2 1 5 5 C 1.37718 * 119.90141 * 180.02562 * 4 3 2 6 6 C 1.38981 * 120.09453 * 0.02562 * 5 4 3 7 7 O 1.35759 * 119.90327 * 180.02562 * 6 5 4 8 8 C 1.38936 * 120.19385 * 359.97438 * 6 5 4 9 9 C 1.50700 * 119.95546 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.47210 * 325.00462 * 9 8 6 11 11 N 1.46899 * 109.47483 * 205.00131 * 9 8 6 12 12 C 1.50702 * 109.46869 * 85.00168 * 9 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.37751 * 120.09649 * 0.26195 * 8 6 5 21 21 H 1.07997 * 120.04424 * 359.97438 * 4 3 2 22 22 H 1.07999 * 119.94911 * 179.97438 * 5 4 3 23 23 H 0.96698 * 113.99898 * 269.98081 * 7 6 5 24 24 H 1.00902 * 111.00292 * 176.04974 * 11 9 8 25 25 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 26 26 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 27 27 H 1.07999 * 120.05363 * 179.71969 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -0.7611 -0.9392 5 6 4.6464 -0.7580 -0.9352 6 6 5.3389 0.0006 0.0010 7 8 6.6965 0.0012 0.0010 8 6 4.6459 0.7592 0.9362 9 6 5.4023 1.5793 1.9494 10 1 6.3123 1.0526 2.2368 11 7 4.5619 1.7883 3.1360 12 6 5.7626 2.9132 1.3477 13 1 5.4725 3.1442 0.3333 14 6 6.4571 3.8412 2.0944 15 7 6.8100 3.5601 3.3297 16 14 6.8970 5.4975 1.3512 17 1 6.3891 5.5653 -0.0426 18 1 6.2784 6.5813 2.1563 19 1 8.3728 5.6631 1.3492 20 6 3.2684 0.7581 0.9426 21 1 2.7317 -1.3518 -1.6662 22 1 5.1889 -1.3465 -1.6602 23 1 7.0901 -0.6849 0.5572 24 1 5.0691 2.2806 3.8561 25 1 3.7114 2.2751 2.8956 26 1 7.2990 4.2129 3.8549 27 1 2.7305 1.3444 1.6728 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095717322.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:54 Heat of formation + Delta-G solvation = -13.557548 kcal Electronic energy + Delta-G solvation = -13893.076788 eV Core-core repulsion = 11422.051164 eV Total energy + Delta-G solvation = -2471.025624 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.87556 -38.19989 -37.07414 -36.38423 -33.58717 -31.28219 -30.77880 -27.96545 -24.90012 -24.35332 -22.02263 -19.41589 -19.23034 -18.50863 -17.05676 -16.62788 -16.32473 -15.68497 -15.07179 -15.00096 -14.73726 -14.40229 -14.16991 -13.79719 -13.42314 -13.26416 -12.88094 -12.75574 -12.66759 -12.50046 -11.90127 -11.88188 -11.05527 -10.69081 -9.73770 -9.46089 -9.15062 -8.09570 -6.31950 -0.15995 0.53737 1.36954 1.41417 1.51190 1.63801 1.94305 2.39906 2.93041 2.95027 3.09188 3.47363 4.03610 4.07602 4.25180 4.63737 4.79474 4.88231 5.04616 5.23724 5.37724 5.44175 5.68367 5.85098 5.86433 6.10190 6.46840 6.67329 6.93663 7.01637 7.11480 7.42153 8.85220 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.030520 B = 0.008930 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.215872 B = 3134.885188 C = 3477.365919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.288 3.712 3 C -0.056 4.056 4 C -0.056 4.056 5 C -0.141 4.141 6 C 0.130 3.870 7 O -0.501 6.501 8 C -0.092 4.092 9 C 0.250 3.750 10 H 0.026 0.974 11 N -0.844 5.844 12 C -0.545 4.545 13 H 0.041 0.959 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.052 4.052 21 H 0.166 0.834 22 H 0.166 0.834 23 H 0.405 0.595 24 H 0.347 0.653 25 H 0.317 0.683 26 H 0.266 0.734 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -8.066 -6.385 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.026 4.026 3 C -0.059 4.059 4 C -0.076 4.076 5 C -0.160 4.160 6 C 0.084 3.916 7 O -0.314 6.314 8 C -0.093 4.093 9 C 0.140 3.860 10 H 0.044 0.956 11 N -0.373 5.373 12 C -0.585 4.585 13 H 0.060 0.940 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.073 4.073 21 H 0.183 0.817 22 H 0.184 0.816 23 H 0.264 0.736 24 H 0.161 0.839 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.548 -8.337 -6.548 11.179 hybrid contribution 1.162 1.875 0.181 2.213 sum -2.386 -6.462 -6.367 9.380 Atomic orbital electron populations 1.81208 1.12911 1.10347 1.09846 1.25760 0.92562 0.92137 0.92175 1.16041 0.83578 1.04893 1.01420 1.21195 0.93442 0.96480 0.96469 1.21491 0.94010 1.00338 1.00115 1.18818 0.83557 0.94982 0.94257 1.84767 1.15738 1.59728 1.71173 1.20571 0.93915 0.97520 0.97291 1.17630 0.90511 0.91632 0.86207 0.95598 1.59584 1.09058 1.55990 1.12703 1.21956 1.36255 1.00998 0.99287 0.94038 1.25618 0.94990 1.01567 0.95385 1.69818 1.40054 1.36342 1.09260 0.85603 0.77875 0.80185 0.78489 1.20008 1.20562 1.20629 1.20825 0.93145 0.96736 0.96570 0.81673 0.81631 0.73634 0.83859 0.87321 0.92443 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.30 18.54 19.00 0.35 -14.95 15 2 C 0.29 8.51 15.33 88.33 1.35 9.86 15 3 C -0.06 -1.58 5.74 -21.30 -0.12 -1.70 15 4 C -0.06 -1.25 9.75 22.52 0.22 -1.03 15 5 C -0.14 -3.39 9.97 22.32 0.22 -3.17 15 6 C 0.13 4.25 6.68 22.62 0.15 4.40 15 7 O -0.50 -16.39 12.61 -90.85 -1.15 -17.54 15 8 C -0.09 -3.53 5.00 -19.81 -0.10 -3.63 15 9 C 0.25 11.73 2.67 43.42 0.12 11.84 15 10 H 0.03 1.34 7.68 -2.38 -0.02 1.33 15 11 N -0.84 -38.07 8.78 -174.95 -1.54 -39.61 15 12 C -0.55 -28.53 8.71 25.60 0.22 -28.31 15 13 H 0.04 2.25 7.74 -2.91 -0.02 2.22 15 14 C 0.02 1.28 5.38 84.66 0.46 1.74 15 15 N -0.91 -49.12 11.53 21.45 0.25 -48.87 15 16 Si 0.95 42.52 29.54 68.60 2.03 44.55 15 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 20 C -0.05 -1.78 8.97 22.52 0.20 -1.57 15 21 H 0.17 2.51 8.06 -2.91 -0.02 2.48 15 22 H 0.17 2.84 8.06 -2.91 -0.02 2.82 15 23 H 0.40 9.36 9.06 -74.06 -0.67 8.69 15 24 H 0.35 17.07 7.07 -89.69 -0.63 16.44 15 25 H 0.32 13.57 7.20 -89.69 -0.65 12.92 15 26 H 0.27 13.66 8.31 -92.70 -0.77 12.89 15 27 H 0.13 4.42 6.27 -2.91 -0.02 4.40 15 Total: -1.00 -60.54 249.96 1.96 -58.58 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.71 Total: 29.42 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 2.72 Total: -11.57 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -0.94 Total: -103.43 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.15 Total: -17.54 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -60.54 1.96 -58.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095717322.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.022 kcal (2) G-P(sol) polarization free energy of solvation -60.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds