Wall clock time and date at job start Mon Mar 30 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.38228 * 304.78941 * 10 9 7 12 12 C 1.52586 * 109.38486 * 184.99748 * 10 9 7 13 13 C 1.52588 * 110.63985 * 169.85364 * 12 10 9 14 14 C 1.53035 * 109.98647 * 69.98892 * 13 12 10 15 15 S 1.81671 * 108.99677 * 296.34762 * 14 13 12 16 16 O 1.42103 * 108.66443 * 168.62959 * 15 14 13 17 17 O 1.42105 * 108.66161 * 299.96876 * 15 14 13 18 18 C 1.53036 * 109.38830 * 64.46810 * 10 9 7 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 21 21 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 22 22 H 1.09001 * 109.23983 * 290.15312 * 12 10 9 23 23 H 1.08995 * 109.24001 * 49.59108 * 12 10 9 24 24 H 1.09006 * 109.38426 * 190.14038 * 13 12 10 25 25 H 1.08998 * 109.38905 * 309.93053 * 13 12 10 26 26 H 1.08997 * 109.55568 * 56.20414 * 14 13 12 27 27 H 1.09009 * 109.54710 * 176.39860 * 14 13 12 28 28 H 1.09003 * 109.54796 * 303.66793 * 18 10 9 29 29 H 1.09000 * 109.54497 * 63.94820 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 1 3.5885 -3.1742 0.8423 12 6 5.5421 -2.6364 0.1246 13 6 6.0611 -4.0489 0.3774 14 6 5.8883 -4.9026 -0.8809 15 16 4.1163 -5.0637 -1.2476 16 8 3.9695 -5.6238 -2.5453 17 8 3.4783 -5.6890 -0.1424 18 6 3.6046 -3.3216 -1.3049 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6809 0.8904 22 1 5.9788 -2.2528 -0.7975 23 1 5.8336 -1.9932 0.9548 24 1 7.1176 -4.0042 0.6419 25 1 5.5015 -4.4986 1.1975 26 1 6.3921 -4.4223 -1.7197 27 1 6.3189 -5.8900 -0.7137 28 1 2.5220 -3.2629 -1.4178 29 1 4.0879 -2.8270 -2.1474 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107418805.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:31 Heat of formation + Delta-G solvation = -118.138770 kcal Electronic energy + Delta-G solvation = -13389.715558 eV Core-core repulsion = 11017.306151 eV Total energy + Delta-G solvation = -2372.409406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.80177 -37.81341 -37.00489 -35.11093 -33.41573 -29.71409 -28.51906 -25.26946 -22.68507 -21.14874 -19.72452 -18.89110 -17.56159 -17.28700 -16.62285 -16.29212 -15.96152 -15.11640 -14.75392 -14.37054 -13.94412 -13.81867 -13.47650 -13.16317 -13.05296 -13.00927 -12.69403 -12.24223 -12.18814 -11.91257 -11.74696 -11.55965 -11.39058 -11.08668 -10.74786 -10.65251 -8.26670 -6.30738 -0.81218 1.37680 1.39641 1.50907 1.86044 2.37857 2.80111 3.06635 3.11104 3.77173 3.79612 3.92750 3.97786 4.24002 4.38219 4.60090 4.77696 4.87242 4.96592 5.10689 5.17988 5.23652 5.30798 5.46697 5.64053 5.70501 6.31077 6.78461 7.33396 8.90408 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.009071 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.985709 B = 3086.021241 C = 3438.217171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.236 1.236 6 H -0.291 1.291 7 C -0.530 4.530 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.068 4.068 11 H 0.063 0.937 12 C -0.137 4.137 13 C -0.110 4.110 14 C -0.570 4.570 15 S 2.408 3.592 16 O -0.991 6.991 17 O -0.988 6.988 18 C -0.583 4.583 19 H 0.264 0.736 20 H 0.032 0.968 21 H 0.029 0.971 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.156 0.844 28 H 0.107 0.893 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -5.143 -1.303 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.159 1.159 6 H -0.217 1.217 7 C -0.568 4.568 8 H 0.048 0.952 9 C -0.044 4.044 10 C -0.087 4.087 11 H 0.082 0.918 12 C -0.174 4.174 13 C -0.149 4.149 14 C -0.704 4.704 15 S 2.597 3.403 16 O -0.988 6.988 17 O -0.986 6.986 18 C -0.713 4.713 19 H 0.073 0.927 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.139 0.861 25 H 0.092 0.908 26 H 0.183 0.817 27 H 0.174 0.826 28 H 0.125 0.875 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.957 -5.856 -1.457 17.999 hybrid contribution -0.559 1.333 0.044 1.446 sum 16.398 -4.523 -1.413 17.069 Atomic orbital electron populations 1.70103 1.08599 1.28045 1.53063 1.26115 0.95602 1.03854 0.94365 0.85620 0.79738 0.77854 0.79168 1.19264 1.15915 1.21729 1.21591 0.92618 0.92842 1.49798 0.95227 1.19610 0.93470 0.93823 0.97472 1.20802 0.96724 0.97628 0.93575 0.91830 1.21869 0.92310 0.97893 1.05301 1.21379 1.05635 0.93332 0.94505 1.29983 1.19657 1.11403 1.09311 1.07991 0.80990 0.77846 0.73466 1.93498 1.87132 1.76909 1.41291 1.93502 1.75596 1.74489 1.54970 1.30191 1.11712 1.21940 1.07484 0.92716 0.94969 0.95256 0.88656 0.88988 0.86149 0.90777 0.81662 0.82580 0.87463 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.48 13.96 21.45 0.30 -60.18 15 2 C 0.00 -0.20 5.47 84.66 0.46 0.26 15 3 Si 0.95 42.89 27.47 68.60 1.88 44.78 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.24 -9.42 6.54 99.48 0.65 -8.77 15 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 7 C -0.53 -29.75 8.90 25.60 0.23 -29.53 15 8 H 0.03 1.86 7.28 -2.91 -0.02 1.84 15 9 C -0.01 -0.23 3.50 29.85 0.10 -0.13 15 10 C -0.07 -2.28 1.97 -10.92 -0.02 -2.30 15 11 H 0.06 2.36 8.00 -2.39 -0.02 2.34 15 12 C -0.14 -2.91 4.93 30.32 0.15 -2.76 15 13 C -0.11 -1.81 5.73 30.47 0.17 -1.64 15 14 C -0.57 -8.90 6.35 71.99 0.46 -8.44 15 15 S 2.41 68.55 5.31 -56.49 -0.30 68.25 15 16 O -0.99 -34.09 18.10 -127.40 -2.31 -36.40 15 17 O -0.99 -36.79 17.93 -127.40 -2.28 -39.07 15 18 C -0.58 -18.87 5.48 71.99 0.39 -18.47 15 19 H 0.26 15.60 8.31 -92.70 -0.77 14.83 15 20 H 0.03 1.29 7.20 -2.39 -0.02 1.28 15 21 H 0.03 1.18 7.53 -2.39 -0.02 1.17 15 22 H 0.09 1.58 8.09 -2.39 -0.02 1.56 15 23 H 0.09 1.82 8.06 -2.39 -0.02 1.80 15 24 H 0.12 1.20 8.14 -2.38 -0.02 1.18 15 25 H 0.07 1.41 8.00 -2.39 -0.02 1.39 15 26 H 0.17 1.57 8.14 -2.39 -0.02 1.56 15 27 H 0.16 1.73 8.14 -2.38 -0.02 1.71 15 28 H 0.11 4.33 6.82 -2.39 -0.02 4.31 15 29 H 0.15 3.89 8.14 -2.39 -0.02 3.87 15 Total: -1.00 -79.17 247.71 0.31 -78.86 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.07 Total: 6.77 kcal Atomic # 6 Polarization: -64.95 SS G_CDS: 1.95 Total: -63.00 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.30 Total: -60.18 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -4.59 Total: -75.47 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 68.55 SS G_CDS: -0.30 Total: 68.25 kcal Total: -79.17 0.31 -78.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107418805.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.279 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds