Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48500 * 109.46966 * 239.99765 * 3 2 1 5 5 H 1.48500 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47390 * 119.99844 * 3 2 1 7 7 C 1.38658 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00071 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99505 * 0.27773 * 7 2 1 10 10 C 1.35762 * 116.99523 * 174.66436 * 9 7 2 11 11 C 1.39033 * 119.99327 * 185.27295 * 10 9 7 12 12 C 1.38131 * 120.12982 * 179.74378 * 11 10 9 13 13 C 1.38297 * 120.43179 * 0.54236 * 12 11 10 14 14 C 1.39511 * 120.01422 * 359.73323 * 13 12 11 15 15 C 1.38362 * 119.99716 * 5.55129 * 10 9 7 16 16 C 1.47254 * 110.64239 * 179.97438 * 14 13 12 17 17 O 1.21255 * 125.94952 * 179.97438 * 16 14 13 18 18 C 1.50938 * 108.10754 * 0.02562 * 16 14 13 19 19 C 1.51005 * 130.40440 * 179.71767 * 13 12 11 20 20 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.93220 * 0.02562 * 11 10 9 22 22 H 1.07999 * 119.78169 * 180.27496 * 12 11 10 23 23 H 1.08000 * 119.99114 * 359.97438 * 15 10 9 24 24 H 1.09002 * 110.27310 * 241.03570 * 18 16 14 25 25 H 1.09000 * 110.35036 * 119.01144 * 18 16 14 26 26 H 1.08996 * 110.08402 * 299.23531 * 19 13 12 27 27 H 1.09002 * 110.08498 * 60.80229 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 -0.0046 10 6 2.0700 -3.5042 -0.1163 11 6 1.4343 -4.7346 -0.2385 12 6 2.1798 -5.8914 -0.3576 13 6 3.5617 -5.8386 -0.3452 14 6 4.2120 -4.6110 -0.2174 15 6 3.4520 -3.4376 -0.1026 16 6 5.6731 -4.7940 -0.2279 17 8 6.5015 -3.9135 -0.1346 18 6 5.9602 -6.2684 -0.3761 19 6 4.5844 -6.9445 -0.4518 20 1 -0.4850 0.8400 -0.0004 21 1 0.3556 -4.7855 -0.2449 22 1 1.6801 -6.8437 -0.4567 23 1 3.9455 -2.4821 -0.0035 24 1 6.5132 -6.6344 0.4889 25 1 6.5238 -6.4548 -1.2903 26 1 4.4655 -7.6452 0.3746 27 1 4.4751 -7.4650 -1.4033 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108322451.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -42.484004 kcal Electronic energy + Delta-G solvation = -13813.768476 eV Core-core repulsion = 11309.195756 eV Total energy + Delta-G solvation = -2504.572721 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.04563 -38.39095 -36.78107 -33.90773 -32.19485 -30.28190 -28.08829 -25.44004 -25.36506 -22.27535 -20.55186 -19.54750 -18.02369 -16.88433 -15.55267 -15.37068 -15.19182 -14.58897 -13.85185 -13.77499 -13.66851 -13.21276 -13.15787 -12.68416 -11.92978 -11.77394 -11.62104 -11.15680 -11.10255 -10.79238 -10.56765 -10.47791 -9.76674 -9.14742 -8.87319 -8.38523 -7.32511 -6.50278 -4.09697 1.18017 2.11941 2.89602 3.13741 3.15219 3.17222 3.94034 4.30751 4.37142 4.81663 5.00154 5.04194 5.16322 5.21643 5.50338 5.59742 5.81533 5.88142 5.98520 6.00433 6.19808 6.48535 6.58990 6.87482 7.00407 7.06471 7.29008 7.57365 7.84517 7.93266 8.95030 9.60012 10.66998 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.008257 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.357742 B = 3390.387949 C = 4106.081604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.137 3.863 11 C -0.153 4.153 12 C -0.076 4.076 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.405 3.595 17 O -0.456 6.456 18 C -0.170 4.170 19 C -0.065 4.065 20 H 0.272 0.728 21 H 0.126 0.874 22 H 0.119 0.881 23 H 0.134 0.866 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -10.725 -0.914 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.472 4.472 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.083 3.917 11 C -0.172 4.172 12 C -0.094 4.094 13 C -0.149 4.149 14 C -0.151 4.151 15 C -0.184 4.184 16 C 0.284 3.716 17 O -0.332 6.332 18 C -0.208 4.208 19 C -0.102 4.102 20 H 0.082 0.918 21 H 0.144 0.856 22 H 0.137 0.863 23 H 0.151 0.849 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.226 -10.037 -0.841 11.841 hybrid contribution 0.369 0.806 -0.004 0.887 sum 6.595 -9.231 -0.845 11.377 Atomic orbital electron populations 1.70023 1.05975 1.27974 1.45504 1.25286 0.95855 0.98861 0.96235 0.85773 0.78725 0.79529 0.79447 1.19356 1.20183 1.19339 1.21319 0.91896 0.80733 1.53279 0.88988 1.84007 1.33940 1.11345 1.78285 1.19177 0.89829 0.88558 0.94099 1.20394 0.99925 0.90030 1.06840 1.20065 0.91744 0.97247 1.00374 1.20037 0.93612 0.94244 1.07008 1.20683 0.94705 0.94417 1.05284 1.21169 0.93294 0.98100 1.05835 1.22646 0.88202 0.90455 0.70272 1.90499 1.54668 1.49906 1.38116 1.22259 0.99146 0.94937 1.04431 1.20517 0.91001 0.96263 1.02434 0.91838 0.85605 0.86327 0.84878 0.88085 0.88065 0.90458 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 15 2 C 0.04 1.17 5.49 -17.51 -0.10 1.07 15 3 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.40 -11.14 9.48 30.89 0.29 -10.85 15 8 H 0.09 2.45 5.20 -52.49 -0.27 2.17 15 9 O -0.17 -4.85 9.76 0.00 0.00 -4.85 15 10 C 0.14 3.27 6.64 -39.24 -0.26 3.01 15 11 C -0.15 -3.04 9.99 -39.33 -0.39 -3.43 15 12 C -0.08 -1.26 10.02 -39.60 -0.40 -1.65 15 13 C -0.15 -2.43 6.21 -103.98 -0.65 -3.07 15 14 C -0.15 -2.90 6.11 -104.99 -0.64 -3.54 15 15 C -0.16 -3.73 9.23 -38.77 -0.36 -4.09 15 16 C 0.41 7.11 7.77 -30.53 -0.24 6.87 15 17 O -0.46 -9.33 18.02 5.58 0.10 -9.23 15 18 C -0.17 -2.05 6.86 -27.52 -0.19 -2.24 15 19 C -0.07 -0.77 6.80 -27.49 -0.19 -0.95 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.13 2.34 8.06 -52.49 -0.42 1.92 15 22 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 23 H 0.13 3.16 5.62 -52.49 -0.29 2.87 15 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 244.73 15.07 3.69 3.69 Total: -1.00 -31.37 244.73 -5.83 -37.20 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -2.24 Total: 0.57 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.11 Total: -18.88 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.76 Total: -24.26 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.10 Total: -14.08 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.37 -5.83 -37.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108322451.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.286 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds