Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48500 * 109.46966 * 239.99765 * 3 2 1 5 5 H 1.48500 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47390 * 119.99844 * 3 2 1 7 7 C 1.38658 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00071 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99505 * 0.27773 * 7 2 1 10 10 C 1.35762 * 116.99523 * 174.66436 * 9 7 2 11 11 C 1.39033 * 119.99327 * 185.27295 * 10 9 7 12 12 C 1.38131 * 120.12982 * 179.74378 * 11 10 9 13 13 C 1.38297 * 120.43179 * 0.54236 * 12 11 10 14 14 C 1.39511 * 120.01422 * 359.73323 * 13 12 11 15 15 C 1.38362 * 119.99716 * 5.55129 * 10 9 7 16 16 C 1.47254 * 110.64239 * 179.97438 * 14 13 12 17 17 O 1.21255 * 125.94952 * 179.97438 * 16 14 13 18 18 C 1.50938 * 108.10754 * 0.02562 * 16 14 13 19 19 C 1.51005 * 130.40440 * 179.71767 * 13 12 11 20 20 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.93220 * 0.02562 * 11 10 9 22 22 H 1.07999 * 119.78169 * 180.27496 * 12 11 10 23 23 H 1.08000 * 119.99114 * 359.97438 * 15 10 9 24 24 H 1.09002 * 110.27310 * 241.03570 * 18 16 14 25 25 H 1.09000 * 110.35036 * 119.01144 * 18 16 14 26 26 H 1.08996 * 110.08402 * 299.23531 * 19 13 12 27 27 H 1.09002 * 110.08498 * 60.80229 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 -0.0046 10 6 2.0700 -3.5042 -0.1163 11 6 1.4343 -4.7346 -0.2385 12 6 2.1798 -5.8914 -0.3576 13 6 3.5617 -5.8386 -0.3452 14 6 4.2120 -4.6110 -0.2174 15 6 3.4520 -3.4376 -0.1026 16 6 5.6731 -4.7940 -0.2279 17 8 6.5015 -3.9135 -0.1346 18 6 5.9602 -6.2684 -0.3761 19 6 4.5844 -6.9445 -0.4518 20 1 -0.4850 0.8400 -0.0004 21 1 0.3556 -4.7855 -0.2449 22 1 1.6801 -6.8437 -0.4567 23 1 3.9455 -2.4821 -0.0035 24 1 6.5132 -6.6344 0.4889 25 1 6.5238 -6.4548 -1.2903 26 1 4.4655 -7.6452 0.3746 27 1 4.4751 -7.4650 -1.4033 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108322451.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -63.429615 kcal Electronic energy + Delta-G solvation = -13814.676746 eV Core-core repulsion = 11309.195756 eV Total energy + Delta-G solvation = -2505.480991 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.52232 -40.06552 -38.36439 -35.35121 -34.14063 -31.82889 -29.56833 -27.34190 -26.73630 -23.77997 -22.02424 -20.99683 -19.88721 -18.61372 -16.99853 -16.71089 -16.68493 -16.33582 -15.54036 -15.48885 -15.32951 -14.66357 -14.43112 -14.29153 -13.64826 -13.15198 -12.96225 -12.70389 -12.59237 -12.31528 -12.16571 -11.80926 -11.61822 -10.82556 -10.62111 -9.94893 -9.01053 -8.53648 -6.22408 -0.32988 0.56658 1.30016 1.37368 1.45399 1.47766 2.12725 2.73488 3.02355 3.05993 3.44253 3.63659 3.88000 4.11740 4.24812 4.36759 4.38519 4.60717 4.86665 4.87496 5.02416 5.05678 5.18058 5.19060 5.37785 5.50939 5.56916 5.93707 6.02460 6.48458 6.90764 7.67211 8.68517 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.008257 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.357742 B = 3390.387949 C = 4106.081604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.014 4.014 3 Si 1.012 2.988 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.090 0.910 9 O -0.225 6.225 10 C 0.095 3.905 11 C -0.152 4.152 12 C -0.065 4.065 13 C -0.110 4.110 14 C -0.181 4.181 15 C -0.191 4.191 16 C 0.397 3.603 17 O -0.499 6.499 18 C -0.155 4.155 19 C -0.061 4.061 20 H 0.275 0.725 21 H 0.134 0.866 22 H 0.174 0.826 23 H 0.102 0.898 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 -14.524 -1.355 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.213 4.213 3 Si 0.832 3.168 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.496 4.496 8 H 0.107 0.893 9 O -0.132 6.132 10 C 0.045 3.955 11 C -0.171 4.171 12 C -0.083 4.083 13 C -0.111 4.111 14 C -0.183 4.183 15 C -0.211 4.211 16 C 0.278 3.722 17 O -0.378 6.378 18 C -0.192 4.192 19 C -0.097 4.097 20 H 0.085 0.915 21 H 0.152 0.848 22 H 0.192 0.808 23 H 0.120 0.880 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.945 -13.906 -1.286 16.067 hybrid contribution -0.048 1.582 0.107 1.587 sum 7.897 -12.324 -1.179 14.684 Atomic orbital electron populations 1.70139 1.07678 1.29035 1.48199 1.26464 0.96870 1.02339 0.95606 0.84745 0.77570 0.74786 0.79737 1.18623 1.18654 1.18565 1.21643 0.92095 0.81780 1.54107 0.89312 1.83951 1.35199 1.12289 1.81792 1.19759 0.90607 0.88913 0.96179 1.20809 1.00920 0.89753 1.05630 1.20639 0.91928 0.97906 0.97804 1.20833 0.94444 0.94802 1.01044 1.21247 0.96779 0.94469 1.05767 1.21125 0.93396 0.98615 1.07918 1.23459 0.86721 0.93191 0.68790 1.90485 1.55168 1.51976 1.40167 1.22361 1.00299 0.89383 1.07163 1.20786 0.88204 0.94781 1.05957 0.91549 0.84800 0.80816 0.88002 0.85050 0.85057 0.86664 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.67 21.61 0.30 -56.08 15 2 C -0.01 -0.83 5.49 84.83 0.47 -0.37 15 3 Si 1.01 44.81 29.55 68.60 2.03 46.84 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.42 -25.59 9.48 67.92 0.64 -24.94 15 8 H 0.09 5.21 5.20 -2.91 -0.02 5.19 15 9 O -0.23 -13.76 9.76 -22.92 -0.22 -13.98 15 10 C 0.10 4.81 6.64 22.49 0.15 4.96 15 11 C -0.15 -5.99 9.99 22.44 0.22 -5.77 15 12 C -0.07 -1.88 10.02 22.26 0.22 -1.65 15 13 C -0.11 -3.13 6.21 -19.45 -0.12 -3.25 15 14 C -0.18 -6.88 6.11 -20.11 -0.12 -7.00 15 15 C -0.19 -9.18 9.23 22.79 0.21 -8.97 15 16 C 0.40 13.16 7.77 28.13 0.22 13.38 15 17 O -0.50 -20.50 18.02 -2.95 -0.05 -20.55 15 18 C -0.16 -2.81 6.86 30.08 0.21 -2.60 15 19 C -0.06 -0.97 6.80 30.11 0.20 -0.76 15 20 H 0.28 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.13 4.97 8.06 -2.91 -0.02 4.94 15 22 H 0.17 3.22 8.06 -2.91 -0.02 3.19 15 23 H 0.10 5.38 5.62 -2.91 -0.02 5.37 15 24 H 0.13 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.13 1.75 8.14 -2.39 -0.02 1.74 15 26 H 0.12 1.22 8.14 -2.39 -0.02 1.20 15 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15 Total: -1.00 -77.89 244.73 5.54 -72.35 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.19 Total: 8.39 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 2.30 Total: -36.97 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.30 Total: -56.08 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.28 Total: -34.53 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.89 5.54 -72.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108322451.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.921 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds