Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.39150 * 124.43615 * 269.70426 * 10 9 7 12 12 C 1.27576 * 113.15906 * 179.77007 * 11 10 9 13 13 C 1.50701 * 126.41236 * 180.15201 * 12 11 10 14 14 F 1.39899 * 109.47476 * 30.37252 * 13 12 11 15 15 F 1.39906 * 109.47074 * 150.37571 * 13 12 11 16 16 C 1.51440 * 107.16984 * 0.46233 * 12 11 10 17 17 C 1.34954 * 124.44054 * 89.99437 * 10 9 7 18 18 O 1.21298 * 127.49506 * 0.03188 * 17 10 9 19 19 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 1.09000 * 109.46923 * 270.36944 * 13 12 11 23 23 H 1.09000 * 110.61024 * 241.20375 * 16 12 11 24 24 H 1.08998 * 110.60450 * 118.23438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 7 4.2680 -3.3150 1.1467 12 6 4.6793 -4.4967 0.8974 13 6 5.0517 -5.5470 1.9119 14 9 4.2890 -5.3671 3.0708 15 9 4.8017 -6.8172 1.3814 16 6 4.7305 -4.6437 -0.6090 17 6 4.2536 -3.2953 -1.1139 18 8 4.1282 -2.9408 -2.2671 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6801 -0.8911 21 1 3.8751 -0.6805 0.8889 22 1 6.1102 -5.4571 2.1560 23 1 4.0598 -5.4364 -0.9402 24 1 5.7502 -4.8389 -0.9409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108348682.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -75.804586 kcal Electronic energy + Delta-G solvation = -14397.621548 eV Core-core repulsion = 11369.667159 eV Total energy + Delta-G solvation = -3027.954388 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.08348 -47.10960 -40.81236 -37.07370 -33.92601 -32.14102 -29.16288 -28.75342 -26.31724 -22.67271 -21.16898 -19.53532 -17.72924 -17.23659 -17.13742 -16.95765 -15.84964 -15.64533 -14.59867 -14.37186 -14.03693 -13.81741 -13.44837 -13.09273 -12.66530 -12.57772 -12.12487 -12.09878 -11.67841 -11.16029 -10.74945 -10.69944 -10.24745 -9.69864 -9.43128 -8.73440 -8.19783 -6.22048 -4.24511 1.54899 2.63241 2.97714 3.20782 3.26137 3.27440 3.40640 3.89477 4.01853 4.26375 4.60444 4.71939 5.01275 5.08919 5.23815 5.44722 5.94474 6.48389 6.65253 6.82208 7.34292 7.96160 8.17204 8.37272 8.79127 9.33395 10.90852 Molecular weight = 218.06amu Principal moments of inertia in cm(-1) A = 0.039453 B = 0.008206 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.528499 B = 3411.121196 C = 3735.715929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.236 3.764 10 N -0.433 5.433 11 N -0.158 5.158 12 C -0.038 4.038 13 C 0.367 3.633 14 F -0.186 7.186 15 F -0.191 7.191 16 C -0.157 4.157 17 C 0.497 3.503 18 O -0.492 6.492 19 H 0.268 0.732 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.137 0.863 23 H 0.134 0.866 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.810 -9.749 3.419 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.117 3.883 10 N -0.253 5.253 11 N 0.033 4.967 12 C -0.232 4.232 13 C 0.311 3.689 14 F -0.167 7.167 15 F -0.172 7.172 16 C -0.199 4.199 17 C 0.284 3.716 18 O -0.364 6.364 19 H 0.078 0.922 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.154 0.846 23 H 0.151 0.849 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.235 -8.562 3.414 15.319 hybrid contribution 0.188 0.368 -0.590 0.720 sum 12.423 -8.194 2.824 15.147 Atomic orbital electron populations 1.69880 1.06196 1.27366 1.49122 1.24811 0.94862 0.98950 0.94012 0.86851 0.80356 0.83575 0.79011 1.19658 1.20516 1.18806 1.21194 0.88364 0.95398 1.53087 0.90495 1.19922 0.96405 0.73308 0.98631 1.50236 1.59356 1.15193 1.00538 1.74492 1.03913 1.04308 1.14006 1.25512 1.06207 0.95656 0.95867 1.19400 0.95712 0.76409 0.77334 1.93074 1.78958 1.95067 1.49571 1.93031 1.96014 1.41293 1.86897 1.21921 1.06113 0.99590 0.92233 1.21143 0.77795 0.86827 0.85856 1.90759 1.52317 1.75927 1.17393 0.92171 0.93386 0.93278 0.84571 0.84880 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.96 55.43 0.77 -26.46 14 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 14 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.28 14 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 6 H -0.26 -5.92 6.54 56.52 0.37 -5.55 14 7 C -0.54 -15.75 9.94 -34.44 -0.34 -16.09 14 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 14 9 C 0.24 5.81 5.06 -5.19 -0.03 5.78 14 10 N -0.43 -9.50 3.52 -61.06 -0.22 -9.71 14 11 N -0.16 -2.99 11.96 35.54 0.43 -2.56 14 12 C -0.04 -0.54 7.17 -78.72 -0.56 -1.11 14 13 C 0.37 3.79 5.86 36.01 0.21 4.00 14 14 F -0.19 -2.47 17.28 2.25 0.04 -2.43 14 15 F -0.19 -2.01 17.15 2.25 0.04 -1.97 14 16 C -0.16 -2.15 6.72 -28.19 -0.19 -2.34 14 17 C 0.50 10.07 8.43 -10.43 -0.09 9.99 14 18 O -0.49 -11.52 17.81 5.54 0.10 -11.42 14 19 H 0.27 7.61 8.31 -40.82 -0.34 7.27 14 20 H 0.05 1.18 7.46 -51.93 -0.39 0.79 14 21 H 0.05 1.16 7.20 -51.93 -0.37 0.79 14 22 H 0.14 0.75 8.14 -51.93 -0.42 0.33 14 23 H 0.13 1.65 8.14 -51.93 -0.42 1.23 14 24 H 0.13 1.30 8.14 -51.93 -0.42 0.88 14 LS Contribution 234.01 15.07 3.53 3.53 Total: -1.00 -34.06 234.01 -2.70 -36.76 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -1.62 Total: -4.38 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.10 Total: 2.37 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.98 Total: -38.73 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.10 Total: -11.42 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -34.06 -2.70 -36.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108348682.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.043 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds