Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.39150 * 124.43615 * 269.70426 * 10 9 7 12 12 C 1.27576 * 113.15906 * 179.77007 * 11 10 9 13 13 C 1.50701 * 126.41236 * 180.15201 * 12 11 10 14 14 F 1.39899 * 109.47476 * 30.37252 * 13 12 11 15 15 F 1.39906 * 109.47074 * 150.37571 * 13 12 11 16 16 C 1.51440 * 107.16984 * 0.46233 * 12 11 10 17 17 C 1.34954 * 124.44054 * 89.99437 * 10 9 7 18 18 O 1.21298 * 127.49506 * 0.03188 * 17 10 9 19 19 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 1.09000 * 109.46923 * 270.36944 * 13 12 11 23 23 H 1.09000 * 110.61024 * 241.20375 * 16 12 11 24 24 H 1.08998 * 110.60450 * 118.23438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 7 4.2680 -3.3150 1.1467 12 6 4.6793 -4.4967 0.8974 13 6 5.0517 -5.5470 1.9119 14 9 4.2890 -5.3671 3.0708 15 9 4.8017 -6.8172 1.3814 16 6 4.7305 -4.6437 -0.6090 17 6 4.2536 -3.2953 -1.1139 18 8 4.1282 -2.9408 -2.2671 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6801 -0.8911 21 1 3.8751 -0.6805 0.8889 22 1 6.1102 -5.4571 2.1560 23 1 4.0598 -5.4364 -0.9402 24 1 5.7502 -4.8389 -0.9409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108348682.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -102.039918 kcal Electronic energy + Delta-G solvation = -14398.759197 eV Core-core repulsion = 11369.667159 eV Total energy + Delta-G solvation = -3029.092038 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.97250 -48.01215 -42.24841 -38.63177 -35.80383 -34.04241 -30.58567 -30.30968 -27.66844 -24.57041 -22.48239 -20.95812 -19.34228 -18.55348 -18.38270 -18.06015 -17.36089 -17.11977 -16.21362 -15.89732 -15.59811 -14.82573 -14.64385 -14.34753 -14.27607 -14.01437 -13.88381 -13.66171 -13.00142 -12.60432 -12.53629 -12.10690 -12.01368 -11.84689 -10.98021 -10.90391 -9.84458 -8.44796 -6.55029 0.31666 1.18524 1.31182 1.34373 1.43842 1.52293 2.23739 2.26717 2.75447 2.90361 3.13711 3.44875 3.93309 4.05438 4.21371 4.31081 4.53892 4.57194 5.01931 5.13454 5.22937 6.03451 6.44573 6.51079 6.74334 7.08995 8.72358 Molecular weight = 218.06amu Principal moments of inertia in cm(-1) A = 0.039453 B = 0.008206 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.528499 B = 3411.121196 C = 3735.715929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.237 1.237 7 C -0.556 4.556 8 H 0.022 0.978 9 C 0.244 3.756 10 N -0.458 5.458 11 N -0.213 5.213 12 C 0.004 3.996 13 C 0.370 3.630 14 F -0.204 7.204 15 F -0.188 7.188 16 C -0.142 4.142 17 C 0.477 3.523 18 O -0.542 6.542 19 H 0.274 0.726 20 H 0.047 0.953 21 H 0.060 0.940 22 H 0.204 0.796 23 H 0.155 0.845 24 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 -10.501 4.162 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.160 1.160 7 C -0.594 4.594 8 H 0.040 0.960 9 C 0.124 3.876 10 N -0.276 5.276 11 N -0.020 5.020 12 C -0.190 4.190 13 C 0.315 3.685 14 F -0.185 7.185 15 F -0.169 7.169 16 C -0.183 4.183 17 C 0.267 3.733 18 O -0.418 6.418 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.220 0.780 23 H 0.173 0.827 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.014 -9.355 4.196 18.181 hybrid contribution -0.702 0.362 -0.792 1.119 sum 14.312 -8.993 3.403 17.242 Atomic orbital electron populations 1.70041 1.08402 1.28926 1.50417 1.25926 0.95849 1.03653 0.93012 0.85622 0.79792 0.77379 0.79675 1.18892 1.19536 1.16001 1.21394 0.91001 0.93572 1.53468 0.95991 1.19522 0.93208 0.76057 0.98814 1.50167 1.60187 1.14937 1.02322 1.74566 1.08324 1.06511 1.12646 1.26534 1.00519 0.94676 0.97316 1.20121 0.98186 0.74892 0.75310 1.93049 1.79877 1.95118 1.50431 1.93049 1.96202 1.40832 1.86803 1.22051 1.09173 0.95686 0.91380 1.22206 0.77099 0.89002 0.85028 1.90713 1.54688 1.77395 1.18989 0.91735 0.93484 0.92180 0.77997 0.82739 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.75 13.96 21.45 0.30 -59.45 14 2 C 0.01 0.88 5.47 84.66 0.46 1.35 14 3 Si 0.95 43.50 27.47 68.60 1.88 45.38 14 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 14 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 14 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 14 7 C -0.56 -33.79 9.94 25.60 0.25 -33.54 14 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 14 9 C 0.24 12.24 5.06 85.63 0.43 12.68 14 10 N -0.46 -20.20 3.52 -465.38 -1.64 -21.84 14 11 N -0.21 -7.84 11.96 -40.84 -0.49 -8.32 14 12 C 0.00 0.11 7.17 46.83 0.34 0.45 14 13 C 0.37 5.90 5.86 71.24 0.42 6.32 14 14 F -0.20 -4.83 17.28 44.97 0.78 -4.06 14 15 F -0.19 -3.07 17.15 44.97 0.77 -2.30 14 16 C -0.14 -3.43 6.72 29.65 0.20 -3.23 14 17 C 0.48 19.23 8.43 87.94 0.74 19.97 14 18 O -0.54 -25.92 17.81 -3.09 -0.05 -25.97 14 19 H 0.27 15.97 8.31 -92.70 -0.77 15.20 14 20 H 0.05 2.34 7.46 -2.39 -0.02 2.32 14 21 H 0.06 2.83 7.20 -2.39 -0.02 2.81 14 22 H 0.20 0.84 8.14 -2.39 -0.02 0.82 14 23 H 0.16 3.26 8.14 -2.39 -0.02 3.24 14 24 H 0.19 2.62 8.14 -2.39 -0.02 2.60 14 Total: -1.00 -80.81 234.01 5.57 -75.24 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: 1.18 Total: -2.68 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 2.84 Total: 4.00 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -1.83 Total: -89.61 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.55 Total: -6.36 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Total: -80.81 5.57 -75.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108348682.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.796 kcal (2) G-P(sol) polarization free energy of solvation -80.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds